Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28353 * 124.28083 * 2 1 4 4 C 1.32756 * 111.73261 * 180.02562 * 3 2 1 5 5 C 1.40747 * 126.91493 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00100 * 186.05706 * 5 4 3 7 7 C 1.39955 * 119.99888 * 6.06171 * 5 4 3 8 8 N 1.30861 * 120.00155 * 184.14948 * 7 5 4 9 9 Si 1.86797 * 120.00192 * 4.14896 * 7 5 4 10 10 H 1.48503 * 109.47356 * 180.02562 * 9 7 5 11 11 H 1.48509 * 109.46889 * 300.00082 * 9 7 5 12 12 H 1.48501 * 109.47428 * 59.99749 * 9 7 5 13 13 C 1.47401 * 106.16998 * 0.23946 * 4 3 2 14 14 C 1.38881 * 135.28835 * 179.73021 * 13 4 3 15 15 C 1.38416 * 119.51868 * 180.02562 * 14 13 4 16 16 O 1.35933 * 119.89143 * 179.97438 * 15 14 13 17 17 C 1.39227 * 120.21658 * 0.02562 * 15 14 13 18 18 C 1.37729 * 120.65845 * 359.56026 * 17 15 14 19 19 C 1.37361 * 124.28725 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47391 * 89.98054 * 1 2 3 21 21 H 1.09008 * 109.46837 * 209.97406 * 1 2 3 22 22 H 1.09000 * 109.47399 * 329.97564 * 1 2 3 23 23 H 0.97000 * 120.00028 * 354.83864 * 8 7 5 24 24 H 1.08001 * 120.24006 * 0.02562 * 14 13 4 25 25 H 0.96707 * 114.00030 * 90.00018 * 16 15 14 26 26 H 1.07999 * 119.67355 * 179.97438 * 17 15 14 27 27 H 1.08000 * 120.05254 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1879 1.0606 0.0000 4 6 3.4838 0.7721 -0.0006 5 6 4.5535 1.6869 -0.0012 6 1 5.5683 1.3310 -0.1003 7 6 4.3020 3.0577 0.1266 8 7 5.2879 3.9143 0.0446 9 14 2.5590 3.6647 0.4143 10 1 2.5607 5.1465 0.5131 11 1 1.6955 3.2457 -0.7190 12 1 2.0347 3.0845 1.6768 13 6 3.5769 -0.6989 -0.0069 14 6 4.6144 -1.6222 -0.0149 15 6 4.3231 -2.9753 -0.0197 16 8 5.3326 -3.8856 -0.0281 17 6 2.9995 -3.4072 -0.0170 18 6 1.9644 -2.4987 -0.0005 19 6 2.2388 -1.1349 -0.0005 20 1 -0.3634 0.0003 -1.0276 21 1 -0.3633 -0.8903 0.5135 22 1 -0.3634 0.8897 0.5142 23 1 6.2014 3.5967 -0.0296 24 1 5.6410 -1.2867 -0.0174 25 1 5.6286 -4.1529 0.8529 26 1 2.7822 -4.4651 -0.0212 27 1 0.9413 -2.8445 0.0010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261285824.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = 6.168209 kcal Electronic energy + Delta-G solvation = -14159.715559 eV Core-core repulsion = 11689.545308 eV Total energy + Delta-G solvation = -2470.170251 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.60384 -39.53790 -36.51656 -35.96423 -33.89617 -30.97411 -30.06414 -29.31735 -25.49969 -24.05891 -22.77224 -21.58810 -19.87028 -19.17922 -17.78269 -17.13672 -16.64161 -16.21092 -15.70321 -15.53061 -15.03859 -14.45126 -14.18256 -13.84108 -13.60130 -13.25450 -12.93586 -12.61229 -12.48782 -12.09866 -11.72528 -11.32157 -11.27511 -10.58699 -10.38722 -9.41493 -9.30918 -8.79633 -6.50919 0.18896 0.56603 1.41796 1.47098 1.84179 2.02020 2.22362 2.48254 2.74505 3.24371 3.43281 3.78417 3.93787 4.10027 4.41027 4.48442 4.55517 4.61944 4.70856 4.90248 5.04852 5.33606 5.35354 5.50549 5.57363 5.88043 6.10394 6.27981 6.53381 6.81334 6.99862 7.82961 8.07915 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032828 B = 0.011296 C = 0.008473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.727210 B = 2478.123380 C = 3303.967697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.359 5.359 3 N -0.424 5.424 4 C 0.181 3.819 5 C -0.507 4.507 6 H 0.061 0.939 7 C 0.017 3.983 8 N -0.849 5.849 9 Si 1.151 2.849 10 H -0.301 1.301 11 H -0.269 1.269 12 H -0.285 1.285 13 C -0.203 4.203 14 C -0.082 4.082 15 C 0.040 3.960 16 O -0.503 6.503 17 C -0.097 4.097 18 C -0.125 4.125 19 C 0.072 3.928 20 H 0.077 0.923 21 H 0.112 0.888 22 H 0.082 0.918 23 H 0.277 0.723 24 H 0.108 0.892 25 H 0.400 0.600 26 H 0.166 0.834 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 -12.704 2.065 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.146 5.146 3 N -0.254 5.254 4 C 0.028 3.972 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.477 5.477 9 Si 0.978 3.022 10 H -0.230 1.230 11 H -0.195 1.195 12 H -0.212 1.212 13 C -0.212 4.212 14 C -0.102 4.102 15 C -0.007 4.007 16 O -0.314 6.314 17 C -0.117 4.117 18 C -0.147 4.147 19 C -0.046 4.046 20 H 0.095 0.905 21 H 0.130 0.870 22 H 0.101 0.899 23 H 0.088 0.912 24 H 0.126 0.874 25 H 0.257 0.743 26 H 0.183 0.817 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.331 -10.390 1.591 14.738 hybrid contribution 2.377 -1.660 0.250 2.910 sum -7.953 -12.051 1.841 14.556 Atomic orbital electron populations 1.22041 0.72889 1.05277 1.03895 1.44984 1.07133 1.00059 1.62393 1.72547 1.03085 1.12710 1.37041 1.20452 0.90499 0.90429 0.95793 1.19662 0.92613 0.93020 1.49384 0.92100 1.28141 1.09365 0.92908 0.89291 1.70678 1.01831 1.38266 1.36888 0.82226 0.69203 0.71925 0.78830 1.23008 1.19490 1.21215 1.20060 0.94290 0.93963 1.12883 1.20646 0.97707 0.92456 0.99425 1.18073 0.88221 0.86438 1.07940 1.84799 1.52149 1.59486 1.35013 1.21308 0.90278 1.00861 0.99290 1.20128 1.01036 0.86960 1.06575 1.19582 0.90517 0.91026 1.03468 0.90457 0.86958 0.89925 0.91249 0.87376 0.74280 0.81699 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.78 11.23 127.77 1.43 4.21 15 2 N -0.36 -15.26 3.74 -360.99 -1.35 -16.61 15 3 N -0.42 -21.91 7.18 -48.41 -0.35 -22.26 15 4 C 0.18 10.08 6.68 42.03 0.28 10.36 15 5 C -0.51 -30.09 9.86 23.30 0.23 -29.86 15 6 H 0.06 3.71 8.05 -2.91 -0.02 3.69 15 7 C 0.02 1.01 5.52 85.25 0.47 1.48 15 8 N -0.85 -49.64 13.66 21.83 0.30 -49.34 15 9 Si 1.15 57.32 25.92 68.60 1.78 59.10 15 10 H -0.30 -14.27 7.11 99.48 0.71 -13.56 15 11 H -0.27 -13.23 6.77 99.48 0.67 -12.56 15 12 H -0.29 -14.05 7.11 99.48 0.71 -13.35 15 13 C -0.20 -9.86 6.42 -20.10 -0.13 -9.99 15 14 C -0.08 -3.48 10.02 22.47 0.23 -3.26 15 15 C 0.04 1.34 6.70 22.55 0.15 1.49 15 16 O -0.50 -14.29 13.50 -92.80 -1.25 -15.54 15 17 C -0.10 -2.74 9.95 22.39 0.22 -2.51 15 18 C -0.13 -3.78 9.95 22.36 0.22 -3.56 15 19 C 0.07 2.97 6.84 39.10 0.27 3.24 15 20 H 0.08 1.91 8.14 -2.39 -0.02 1.89 15 21 H 0.11 2.23 8.08 -2.38 -0.02 2.21 15 22 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.28 15.81 8.72 -92.71 -0.81 15.00 15 24 H 0.11 4.69 8.06 -2.91 -0.02 4.67 15 25 H 0.40 7.15 9.06 -74.05 -0.67 6.48 15 26 H 0.17 3.29 8.06 -2.91 -0.02 3.26 15 27 H 0.16 3.38 8.06 -2.91 -0.02 3.36 15 Total: -1.00 -72.68 242.54 2.96 -69.73 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 0.46 Total: 3.34 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 3.38 Total: -28.41 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -1.40 Total: -88.21 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -1.25 Total: -15.54 kcal Atomic # 14 Polarization: 57.32 SS G_CDS: 1.78 Total: 59.10 kcal Total: -72.68 2.96 -69.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285824.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.895 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds