Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35614 * 116.99992 * 2 1 4 4 C 1.38975 * 119.91051 * 0.02562 * 3 2 1 5 5 C 1.37656 * 120.73328 * 179.97438 * 4 3 2 6 6 C 1.40791 * 120.22534 * 0.05909 * 5 4 3 7 7 C 1.40852 * 120.27075 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00239 * 154.35411 * 7 6 5 9 9 C 1.39877 * 120.00150 * 334.35859 * 7 6 5 10 10 N 1.30929 * 119.99382 * 343.16371 * 9 7 6 11 11 Si 1.86796 * 119.99832 * 163.16530 * 9 7 6 12 12 H 1.48498 * 109.47279 * 90.00252 * 11 9 7 13 13 H 1.48507 * 109.46616 * 209.99765 * 11 9 7 14 14 H 1.48494 * 109.47379 * 330.00003 * 11 9 7 15 15 C 1.41335 * 119.45844 * 359.90924 * 6 5 4 16 16 N 1.37374 * 133.97678 * 180.02562 * 15 6 5 17 17 H 0.96998 * 126.30899 * 0.05656 * 16 15 6 18 18 C 1.36034 * 107.37497 * 180.02562 * 16 15 6 19 19 N 1.30132 * 109.91441 * 0.26804 * 18 16 15 20 20 C 1.35783 * 109.48034 * 359.56417 * 19 18 16 21 21 H 1.09001 * 109.47453 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47374 * 300.00467 * 1 2 3 23 23 H 1.08998 * 109.47155 * 60.00718 * 1 2 3 24 24 H 1.08002 * 119.62867 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.88111 * 180.02562 * 5 4 3 26 26 H 0.96998 * 119.99333 * 179.97438 * 10 9 7 27 27 H 1.08002 * 125.04405 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2860 2.3727 0.0005 5 6 1.8932 3.6081 0.0011 6 6 3.2976 3.7075 -0.0002 7 6 3.9200 4.9710 -0.0002 8 1 4.9153 5.0827 0.4038 9 6 3.2489 6.0812 -0.5232 10 7 2.2077 5.9112 -1.2986 11 14 3.8383 7.8062 -0.1156 12 1 4.8327 8.2419 -1.1287 13 1 2.6826 8.7389 -0.1234 14 1 4.4679 7.8094 1.2293 15 6 4.0778 2.5290 0.0000 16 7 5.4287 2.2793 -0.0005 17 1 6.1355 2.9436 -0.0004 18 6 5.5923 0.9289 -0.0006 19 7 4.4309 0.3417 -0.0059 20 6 3.4492 1.2798 0.0002 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 0.2079 2.3075 0.0014 25 1 1.2902 4.5040 0.0019 26 1 1.7421 6.6810 -1.6610 27 1 6.5446 0.4195 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306799462.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = 24.883006 kcal Electronic energy + Delta-G solvation = -14180.023136 eV Core-core repulsion = 11710.664419 eV Total energy + Delta-G solvation = -2469.358717 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.86238 -37.99640 -35.56631 -33.07155 -31.70739 -28.83968 -28.27088 -26.55811 -24.59833 -21.69912 -20.89798 -20.25819 -17.60784 -17.25662 -15.96012 -15.27906 -15.01067 -14.79822 -14.19553 -13.84207 -13.56775 -12.87172 -12.27750 -11.93872 -11.58334 -11.28258 -11.23076 -10.99447 -10.67613 -10.19416 -9.88990 -9.81092 -9.20360 -9.05699 -8.96976 -7.27083 -6.82442 -6.64517 -4.24395 2.36978 2.86097 3.01359 3.02784 3.07781 3.85582 3.93194 4.02154 4.46914 4.63491 5.22832 5.52022 5.77609 5.83634 5.89606 6.01566 6.36270 6.58788 6.73797 6.87988 6.97411 7.07305 7.38614 7.83623 7.90638 7.98497 8.31337 8.41799 8.58518 8.72570 8.76519 9.09164 10.14364 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032180 B = 0.010405 C = 0.008046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.892612 B = 2690.314932 C = 3479.264628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.320 6.320 3 C 0.036 3.964 4 C -0.167 4.167 5 C -0.155 4.155 6 C 0.103 3.897 7 C -0.463 4.463 8 H 0.071 0.929 9 C 0.076 3.924 10 N -0.792 5.792 11 Si 0.907 3.093 12 H -0.271 1.271 13 H -0.275 1.275 14 H -0.262 1.262 15 C 0.015 3.985 16 N -0.590 5.590 17 H 0.414 0.586 18 C 0.209 3.791 19 N -0.499 5.499 20 C 0.049 3.951 21 H 0.081 0.919 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.281 0.719 27 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -1.579 1.598 2.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.234 6.234 3 C -0.010 4.010 4 C -0.188 4.188 5 C -0.178 4.178 6 C 0.098 3.902 7 C -0.493 4.493 8 H 0.089 0.911 9 C -0.142 4.142 10 N -0.418 5.418 11 Si 0.732 3.268 12 H -0.196 1.196 13 H -0.200 1.200 14 H -0.186 1.186 15 C -0.094 4.094 16 N -0.201 5.201 17 H 0.251 0.749 18 C -0.078 4.078 19 N -0.220 5.220 20 C -0.069 4.069 21 H 0.100 0.900 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.122 0.878 25 H 0.145 0.855 26 H 0.092 0.908 27 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.088 -2.547 1.444 3.123 hybrid contribution 0.534 2.172 0.022 2.237 sum 1.621 -0.374 1.465 2.217 Atomic orbital electron populations 1.22738 0.81122 1.01724 1.00362 1.85902 1.18802 1.28059 1.90650 1.17624 0.87835 0.83558 1.11988 1.20617 0.97604 0.92310 1.08236 1.20691 0.93350 0.95535 1.08203 1.16585 0.91063 0.89069 0.93452 1.19189 1.02100 0.92183 1.35861 0.91091 1.25795 0.94361 1.01313 0.92694 1.69855 1.16866 1.33001 1.22039 0.86329 0.79205 0.81295 0.80003 1.19643 1.19995 1.18596 1.18975 0.82732 0.96074 1.11610 1.42668 1.06813 1.07915 1.62744 0.74882 1.24882 0.98643 0.80431 1.03813 1.70293 0.97457 1.32569 1.21723 1.17764 0.90779 0.88909 1.09447 0.90039 0.93928 0.93849 0.87822 0.85457 0.90828 0.78462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.80 101.05 0.99 1.61 15 2 O -0.32 -7.33 10.49 -18.54 -0.19 -7.52 15 3 C 0.04 0.90 6.75 -38.40 -0.26 0.64 15 4 C -0.17 -4.00 8.99 -39.52 -0.36 -4.36 15 5 C -0.16 -4.01 8.67 -38.83 -0.34 -4.34 15 6 C 0.10 2.69 5.57 -106.77 -0.59 2.09 15 7 C -0.46 -11.71 9.03 -37.98 -0.34 -12.05 15 8 H 0.07 1.68 7.90 -52.49 -0.41 1.27 15 9 C 0.08 1.83 5.15 -17.32 -0.09 1.75 15 10 N -0.79 -19.88 10.97 55.55 0.61 -19.27 15 11 Si 0.91 17.97 29.59 -169.99 -5.03 12.94 15 12 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 13 H -0.28 -5.36 7.11 56.52 0.40 -4.96 15 14 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 15 C 0.02 0.38 7.02 -83.61 -0.59 -0.21 15 16 N -0.59 -11.77 6.20 -11.46 -0.07 -11.84 15 17 H 0.41 6.85 8.96 -40.82 -0.37 6.49 15 18 C 0.21 3.93 12.98 -89.77 -1.17 2.76 15 19 N -0.50 -11.73 11.29 -11.99 -0.14 -11.87 15 20 C 0.05 1.25 7.16 -84.61 -0.61 0.64 15 21 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.04 0.68 7.64 -51.93 -0.40 0.28 15 23 H 0.04 0.70 7.65 -51.93 -0.40 0.31 15 24 H 0.10 2.17 6.24 -52.49 -0.33 1.85 15 25 H 0.13 3.32 6.19 -52.49 -0.32 3.00 15 26 H 0.28 6.41 8.30 -40.82 -0.34 6.08 15 27 H 0.20 2.54 8.06 -52.49 -0.42 2.12 15 LS Contribution 240.04 15.07 3.62 3.62 Total: -1.00 -31.19 240.04 -6.76 -37.95 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -2.21 Total: 7.46 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -3.35 Total: -11.46 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.40 Total: -42.98 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.19 Total: -7.52 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.19 -6.76 -37.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306799462.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.832 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds