Wall clock time and date at job start Mon Mar 30 2020 02:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35614 * 116.99992 * 2 1 4 4 C 1.38975 * 119.91051 * 0.02562 * 3 2 1 5 5 C 1.37656 * 120.73328 * 179.97438 * 4 3 2 6 6 C 1.40791 * 120.22534 * 0.05909 * 5 4 3 7 7 C 1.40852 * 120.27075 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00239 * 154.35411 * 7 6 5 9 9 C 1.39877 * 120.00150 * 334.35859 * 7 6 5 10 10 N 1.30929 * 119.99382 * 343.16371 * 9 7 6 11 11 Si 1.86796 * 119.99832 * 163.16530 * 9 7 6 12 12 H 1.48498 * 109.47279 * 90.00252 * 11 9 7 13 13 H 1.48507 * 109.46616 * 209.99765 * 11 9 7 14 14 H 1.48494 * 109.47379 * 330.00003 * 11 9 7 15 15 C 1.41335 * 119.45844 * 359.90924 * 6 5 4 16 16 N 1.37374 * 133.97678 * 180.02562 * 15 6 5 17 17 H 0.96998 * 126.30899 * 0.05656 * 16 15 6 18 18 C 1.36034 * 107.37497 * 180.02562 * 16 15 6 19 19 N 1.30132 * 109.91441 * 0.26804 * 18 16 15 20 20 C 1.35783 * 109.48034 * 359.56417 * 19 18 16 21 21 H 1.09001 * 109.47453 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47374 * 300.00467 * 1 2 3 23 23 H 1.08998 * 109.47155 * 60.00718 * 1 2 3 24 24 H 1.08002 * 119.62867 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.88111 * 180.02562 * 5 4 3 26 26 H 0.96998 * 119.99333 * 179.97438 * 10 9 7 27 27 H 1.08002 * 125.04405 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2860 2.3727 0.0005 5 6 1.8932 3.6081 0.0011 6 6 3.2976 3.7075 -0.0002 7 6 3.9200 4.9710 -0.0002 8 1 4.9153 5.0827 0.4038 9 6 3.2489 6.0812 -0.5232 10 7 2.2077 5.9112 -1.2986 11 14 3.8383 7.8062 -0.1156 12 1 4.8327 8.2419 -1.1287 13 1 2.6826 8.7389 -0.1234 14 1 4.4679 7.8094 1.2293 15 6 4.0778 2.5290 0.0000 16 7 5.4287 2.2793 -0.0005 17 1 6.1355 2.9436 -0.0004 18 6 5.5923 0.9289 -0.0006 19 7 4.4309 0.3417 -0.0059 20 6 3.4492 1.2798 0.0002 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 0.2079 2.3075 0.0014 25 1 1.2902 4.5040 0.0019 26 1 1.7421 6.6810 -1.6610 27 1 6.5446 0.4195 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306799462.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:09 Heat of formation + Delta-G solvation = 4.455649 kcal Electronic energy + Delta-G solvation = -14180.908932 eV Core-core repulsion = 11710.664419 eV Total energy + Delta-G solvation = -2470.244514 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.57317 -39.69041 -37.37201 -34.87705 -33.42862 -30.67121 -29.99086 -28.10861 -26.39436 -23.40894 -22.67786 -21.99154 -19.31870 -19.04175 -17.71056 -16.98402 -16.72604 -16.42688 -15.83911 -15.48883 -15.22713 -14.52716 -13.98504 -13.68450 -13.23547 -12.97678 -12.81158 -12.58124 -12.31769 -11.90630 -11.64944 -11.59180 -10.87991 -10.83378 -10.74722 -9.09352 -8.64119 -8.47456 -6.14230 0.61829 1.03397 1.40299 1.45058 1.54883 2.18336 2.24752 2.45050 2.81582 2.89715 3.62541 3.71083 4.37753 4.43226 4.50753 4.57824 4.76293 4.84052 4.94948 5.08875 5.22016 5.26286 5.57545 5.97655 5.99185 6.15724 6.52243 6.72392 6.82576 6.89599 7.02313 7.36009 8.36335 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032180 B = 0.010405 C = 0.008046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.892612 B = 2690.314932 C = 3479.264628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C 0.022 3.978 4 C -0.170 4.170 5 C -0.181 4.181 6 C 0.078 3.922 7 C -0.489 4.489 8 H 0.079 0.921 9 C 0.035 3.965 10 N -0.824 5.824 11 Si 0.983 3.017 12 H -0.263 1.263 13 H -0.270 1.270 14 H -0.259 1.259 15 C -0.008 4.008 16 N -0.581 5.581 17 H 0.430 0.570 18 C 0.243 3.757 19 N -0.540 5.540 20 C 0.020 3.980 21 H 0.116 0.884 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.126 0.874 25 H 0.115 0.885 26 H 0.288 0.712 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.619 -1.471 1.813 3.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C -0.024 4.024 4 C -0.191 4.191 5 C -0.203 4.203 6 C 0.074 3.926 7 C -0.518 4.518 8 H 0.097 0.903 9 C -0.179 4.179 10 N -0.450 5.450 11 Si 0.804 3.196 12 H -0.188 1.188 13 H -0.194 1.194 14 H -0.183 1.183 15 C -0.118 4.118 16 N -0.193 5.193 17 H 0.270 0.730 18 C -0.044 4.044 19 N -0.263 5.263 20 C -0.097 4.097 21 H 0.135 0.865 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.144 0.856 25 H 0.133 0.867 26 H 0.098 0.902 27 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 2.327 -2.439 1.657 3.756 hybrid contribution 0.178 2.001 -0.060 2.010 sum 2.505 -0.438 1.597 3.003 Atomic orbital electron populations 1.23084 0.78295 1.04320 1.01015 1.85859 1.21800 1.27263 1.90589 1.17880 0.88352 0.84370 1.11822 1.20780 0.98770 0.91655 1.07853 1.20698 0.93689 0.95754 1.10204 1.16919 0.91624 0.90196 0.93885 1.19472 1.02846 0.92698 1.36821 0.90283 1.26676 0.94233 1.05146 0.91886 1.69923 1.17937 1.34538 1.22650 0.85187 0.78781 0.75878 0.79754 1.18826 1.19433 1.18273 1.19069 0.84755 0.95540 1.12456 1.42692 1.05584 1.08995 1.62047 0.72989 1.26106 0.99651 0.79771 0.98869 1.70297 0.98476 1.33008 1.24498 1.18233 0.91789 0.89897 1.09805 0.86545 0.92992 0.93358 0.85601 0.86704 0.90157 0.72199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.80 113.37 1.11 2.02 15 2 O -0.34 -15.55 10.49 -89.25 -0.94 -16.49 15 3 C 0.02 1.12 6.75 23.03 0.16 1.28 15 4 C -0.17 -8.34 8.99 22.31 0.20 -8.14 15 5 C -0.18 -9.65 8.67 22.76 0.20 -9.45 15 6 C 0.08 4.18 5.57 -21.25 -0.12 4.06 15 7 C -0.49 -24.92 9.03 23.31 0.21 -24.71 15 8 H 0.08 3.74 7.90 -2.91 -0.02 3.71 15 9 C 0.04 1.71 5.15 85.22 0.44 2.15 15 10 N -0.82 -42.01 10.97 21.82 0.24 -41.77 15 11 Si 0.98 36.45 29.59 68.60 2.03 38.48 15 12 H -0.26 -9.39 7.11 99.48 0.71 -8.68 15 13 H -0.27 -9.67 7.11 99.48 0.71 -8.97 15 14 H -0.26 -9.38 7.11 99.48 0.71 -8.68 15 15 C -0.01 -0.41 7.02 39.43 0.28 -0.14 15 16 N -0.58 -22.22 6.20 -190.17 -1.18 -23.39 15 17 H 0.43 13.33 8.96 -92.71 -0.83 12.50 15 18 C 0.24 8.42 12.98 180.05 2.34 10.76 15 19 N -0.54 -24.79 11.29 -191.84 -2.17 -26.96 15 20 C 0.02 1.04 7.16 39.51 0.28 1.32 15 21 H 0.12 2.95 8.14 -2.39 -0.02 2.93 15 22 H 0.05 1.59 7.64 -2.39 -0.02 1.58 15 23 H 0.05 1.52 7.65 -2.39 -0.02 1.51 15 24 H 0.13 5.34 6.24 -2.91 -0.02 5.33 15 25 H 0.12 6.26 6.19 -2.91 -0.02 6.24 15 26 H 0.29 13.27 8.30 -92.71 -0.77 12.50 15 27 H 0.26 5.28 8.06 -2.91 -0.02 5.26 15 Total: -1.00 -69.22 240.04 3.46 -65.76 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.38 Total: 25.23 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: 5.09 Total: -20.84 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -3.10 Total: -92.13 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.94 Total: -16.49 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -69.22 3.46 -65.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306799462.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.211 kcal (2) G-P(sol) polarization free energy of solvation -69.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds