Wall clock time and date at job start Mon Mar 30 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35295 * 117.00347 * 2 1 4 4 N 1.30770 * 125.09171 * 359.97079 * 3 2 1 5 5 C 1.35967 * 109.47309 * 179.78182 * 4 3 2 6 6 C 1.39972 * 133.30165 * 179.56918 * 5 4 3 7 7 C 1.38259 * 120.32082 * 180.41120 * 6 5 4 8 8 C 1.37877 * 120.80879 * 0.25350 * 7 6 5 9 9 C 1.40723 * 120.13506 * 359.97438 * 8 7 6 10 10 C 1.41021 * 120.33547 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99512 * 204.53405 * 10 9 8 12 12 C 1.39955 * 120.00333 * 24.53136 * 10 9 8 13 13 N 1.30844 * 120.00182 * 17.84859 * 12 10 9 14 14 Si 1.86799 * 120.00233 * 197.84745 * 12 10 9 15 15 H 1.48505 * 109.47364 * 89.99745 * 14 12 10 16 16 H 1.48496 * 109.47699 * 210.00004 * 14 12 10 17 17 H 1.48504 * 109.47030 * 330.00553 * 14 12 10 18 18 C 1.40054 * 107.03394 * 0.38371 * 5 4 3 19 19 N 1.36379 * 125.09554 * 180.02562 * 3 2 1 20 20 H 0.97001 * 126.32437 * 359.97438 * 19 3 2 21 21 H 1.08998 * 109.47081 * 60.00405 * 1 2 3 22 22 H 1.09002 * 109.47237 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47082 * 300.00160 * 1 2 3 24 24 H 1.07996 * 119.83645 * 0.69085 * 6 5 4 25 25 H 1.08004 * 119.59874 * 180.27978 * 7 6 5 26 26 H 1.08000 * 119.93452 * 180.02562 * 8 7 6 27 27 H 0.96999 * 120.00504 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2055 0.0000 4 7 1.4313 2.3611 -0.0005 5 6 2.3520 3.3616 0.0045 6 6 2.2525 4.7578 -0.0014 7 6 3.3934 5.5388 -0.0020 8 6 4.6451 4.9606 -0.0022 9 6 4.7760 3.5594 -0.0011 10 6 6.0541 2.9635 -0.0007 11 1 6.1839 1.9638 -0.3884 12 6 7.1544 3.6675 0.5019 13 7 6.9686 4.7057 1.2763 14 14 8.8882 3.1250 0.0674 15 1 9.3272 3.8157 -1.1718 16 1 9.8089 3.4715 1.1798 17 1 8.9070 1.6563 -0.1516 18 6 3.6152 2.7567 -0.0006 19 7 3.3935 1.3974 -0.0005 20 1 4.0724 0.7046 -0.0006 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.2799 5.2272 -0.0008 25 1 3.3031 6.6150 -0.0020 26 1 5.5268 5.5842 -0.0023 27 1 7.7311 5.1935 1.6249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306885035.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:55 Heat of formation + Delta-G solvation = 28.362018 kcal Electronic energy + Delta-G solvation = -14034.537778 eV Core-core repulsion = 11565.329923 eV Total energy + Delta-G solvation = -2469.207856 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.94416 -38.01627 -35.70526 -33.59251 -31.82573 -29.24357 -27.90777 -26.68510 -25.18108 -21.49558 -20.86638 -20.28043 -17.84298 -17.19332 -16.10079 -15.83143 -15.70240 -14.96292 -14.02306 -13.51170 -13.14373 -13.01681 -12.76660 -11.76485 -11.65197 -11.34278 -11.26459 -11.01376 -10.58029 -10.29924 -9.97998 -9.89567 -9.57025 -9.00724 -8.94708 -7.17570 -6.84493 -6.75832 -4.38557 2.38396 2.78298 2.90700 3.01435 3.03800 3.10272 3.83268 3.88554 4.63236 4.65157 5.31021 5.43595 5.50017 5.59173 5.78779 6.32515 6.45935 6.59654 6.89834 6.96250 7.02882 7.20526 7.38389 7.68673 7.91739 8.10159 8.15767 8.43197 8.51522 8.69805 8.72491 9.00189 10.08059 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.036672 B = 0.009078 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.351426 B = 3083.608299 C = 3763.084688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.310 6.310 3 C 0.422 3.578 4 N -0.549 5.549 5 C 0.092 3.908 6 C -0.214 4.214 7 C -0.080 4.080 8 C -0.191 4.191 9 C 0.135 3.865 10 C -0.464 4.464 11 H 0.073 0.927 12 C 0.078 3.922 13 N -0.782 5.782 14 Si 0.909 3.091 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.263 1.263 18 C -0.025 4.025 19 N -0.573 5.573 20 H 0.415 0.585 21 H 0.059 0.941 22 H 0.095 0.905 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.125 0.875 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.369 -4.854 -1.522 6.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.215 6.215 3 C 0.118 3.882 4 N -0.289 5.289 5 C -0.024 4.024 6 C -0.237 4.237 7 C -0.100 4.100 8 C -0.213 4.213 9 C 0.131 3.869 10 C -0.493 4.493 11 H 0.091 0.909 12 C -0.141 4.141 13 N -0.406 5.406 14 Si 0.734 3.266 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.130 4.130 19 N -0.192 5.192 20 H 0.253 0.747 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.063 -4.791 -1.370 6.430 hybrid contribution 1.774 -0.715 -0.051 1.913 sum -2.289 -5.506 -1.421 6.130 Atomic orbital electron populations 1.22813 0.75769 1.02477 1.02794 1.85723 1.23155 1.22288 1.90374 1.20387 0.81388 0.86045 1.00359 1.70548 1.31998 0.96033 1.30279 1.18413 0.87436 0.93033 1.03548 1.19383 0.97151 0.89030 1.18097 1.20479 0.92693 0.97351 0.99454 1.20901 0.96066 0.93345 1.10968 1.16611 0.88962 0.90971 0.90367 1.19379 0.91959 1.01685 1.36282 0.90861 1.25846 1.01560 0.94181 0.92509 1.69834 1.33642 1.15733 1.21424 0.86292 0.81016 0.80150 0.79167 1.19108 1.20198 1.18746 1.18988 0.97332 0.80504 1.16172 1.41837 1.04518 1.07699 1.65191 0.74744 0.92244 0.88637 0.92239 0.88702 0.88568 0.85741 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.63 101.05 1.07 1.83 15 2 O -0.31 -5.46 10.55 -17.58 -0.19 -5.65 15 3 C 0.42 9.02 8.88 -88.92 -0.79 8.23 15 4 N -0.55 -12.88 10.63 -12.25 -0.13 -13.01 15 5 C 0.09 2.33 7.22 -84.70 -0.61 1.71 15 6 C -0.21 -5.18 10.10 -38.92 -0.39 -5.57 15 7 C -0.08 -1.89 9.99 -39.71 -0.40 -2.28 15 8 C -0.19 -4.91 8.70 -38.78 -0.34 -5.25 15 9 C 0.14 3.57 5.57 -106.81 -0.60 2.97 15 10 C -0.46 -11.82 9.04 -37.88 -0.34 -12.16 15 11 H 0.07 1.77 7.91 -52.48 -0.42 1.36 15 12 C 0.08 1.89 5.14 -17.33 -0.09 1.80 15 13 N -0.78 -19.52 10.96 55.55 0.61 -18.91 15 14 Si 0.91 17.98 29.60 -169.99 -5.03 12.95 15 15 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 16 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 18 C -0.02 -0.63 7.03 -83.44 -0.59 -1.21 15 19 N -0.57 -12.59 6.23 -11.57 -0.07 -12.66 15 20 H 0.42 7.95 8.96 -40.82 -0.37 7.58 15 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.10 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 24 H 0.09 2.10 8.06 -52.49 -0.42 1.68 15 25 H 0.10 1.98 8.06 -52.48 -0.42 1.55 15 26 H 0.12 3.24 6.15 -52.49 -0.32 2.92 15 27 H 0.28 6.39 8.30 -40.82 -0.34 6.05 15 LS Contribution 243.42 15.07 3.67 3.67 Total: -1.00 -29.17 243.42 -6.56 -35.73 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -2.35 Total: 7.81 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -3.07 Total: -9.93 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.41 Total: -44.58 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.19 Total: -5.65 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.17 -6.56 -35.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306885035.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.093 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds