Wall clock time and date at job start Mon Mar 30 2020 02:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35295 * 117.00347 * 2 1 4 4 N 1.30770 * 125.09171 * 359.97079 * 3 2 1 5 5 C 1.35967 * 109.47309 * 179.78182 * 4 3 2 6 6 C 1.39972 * 133.30165 * 179.56918 * 5 4 3 7 7 C 1.38259 * 120.32082 * 180.41120 * 6 5 4 8 8 C 1.37877 * 120.80879 * 0.25350 * 7 6 5 9 9 C 1.40723 * 120.13506 * 359.97438 * 8 7 6 10 10 C 1.41021 * 120.33547 * 180.02562 * 9 8 7 11 11 H 1.08006 * 119.99512 * 204.53405 * 10 9 8 12 12 C 1.39955 * 120.00333 * 24.53136 * 10 9 8 13 13 N 1.30844 * 120.00182 * 17.84859 * 12 10 9 14 14 Si 1.86799 * 120.00233 * 197.84745 * 12 10 9 15 15 H 1.48505 * 109.47364 * 89.99745 * 14 12 10 16 16 H 1.48496 * 109.47699 * 210.00004 * 14 12 10 17 17 H 1.48504 * 109.47030 * 330.00553 * 14 12 10 18 18 C 1.40054 * 107.03394 * 0.38371 * 5 4 3 19 19 N 1.36379 * 125.09554 * 180.02562 * 3 2 1 20 20 H 0.97001 * 126.32437 * 359.97438 * 19 3 2 21 21 H 1.08998 * 109.47081 * 60.00405 * 1 2 3 22 22 H 1.09002 * 109.47237 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47082 * 300.00160 * 1 2 3 24 24 H 1.07996 * 119.83645 * 0.69085 * 6 5 4 25 25 H 1.08004 * 119.59874 * 180.27978 * 7 6 5 26 26 H 1.08000 * 119.93452 * 180.02562 * 8 7 6 27 27 H 0.96999 * 120.00504 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2055 0.0000 4 7 1.4313 2.3611 -0.0005 5 6 2.3520 3.3616 0.0045 6 6 2.2525 4.7578 -0.0014 7 6 3.3934 5.5388 -0.0020 8 6 4.6451 4.9606 -0.0022 9 6 4.7760 3.5594 -0.0011 10 6 6.0541 2.9635 -0.0007 11 1 6.1839 1.9638 -0.3884 12 6 7.1544 3.6675 0.5019 13 7 6.9686 4.7057 1.2763 14 14 8.8882 3.1250 0.0674 15 1 9.3272 3.8157 -1.1718 16 1 9.8089 3.4715 1.1798 17 1 8.9070 1.6563 -0.1516 18 6 3.6152 2.7567 -0.0006 19 7 3.3935 1.3974 -0.0005 20 1 4.0724 0.7046 -0.0006 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.2799 5.2272 -0.0008 25 1 3.3031 6.6150 -0.0020 26 1 5.5268 5.5842 -0.0023 27 1 7.7311 5.1935 1.6249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306885035.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:54 Heat of formation + Delta-G solvation = 7.914405 kcal Electronic energy + Delta-G solvation = -14035.424453 eV Core-core repulsion = 11565.329923 eV Total energy + Delta-G solvation = -2470.094531 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.70557 -39.52029 -37.49807 -35.43267 -33.63494 -31.08665 -29.55212 -28.09787 -27.03595 -23.23131 -22.70717 -22.05134 -19.57786 -18.92242 -17.86264 -17.44556 -17.31651 -16.64504 -15.51239 -15.08240 -14.98110 -14.69050 -14.54582 -13.46408 -13.16392 -12.93826 -12.80339 -12.54373 -12.19158 -12.10120 -11.72231 -11.66513 -11.34903 -10.81915 -10.77332 -9.04837 -8.67527 -8.60190 -6.30975 0.57463 1.09673 1.24960 1.39711 1.46235 1.52754 2.07056 2.19790 2.79119 3.03979 3.66820 3.68849 4.43332 4.46848 4.51929 4.66607 4.76438 4.79424 5.07581 5.11623 5.20705 5.39493 5.63382 5.84026 6.05201 6.19851 6.28482 6.55674 6.76023 6.82492 6.88774 7.17871 8.29271 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.036672 B = 0.009078 C = 0.007439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.351426 B = 3083.608299 C = 3763.084688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.305 6.305 3 C 0.436 3.564 4 N -0.564 5.564 5 C 0.072 3.928 6 C -0.225 4.225 7 C -0.078 4.078 8 C -0.214 4.214 9 C 0.111 3.889 10 C -0.490 4.490 11 H 0.077 0.923 12 C 0.040 3.960 13 N -0.811 5.811 14 Si 0.984 3.016 15 H -0.262 1.262 16 H -0.268 1.268 17 H -0.259 1.259 18 C -0.048 4.048 19 N -0.570 5.570 20 H 0.426 0.574 21 H 0.058 0.942 22 H 0.143 0.857 23 H 0.056 0.944 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.115 0.885 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 -5.919 -1.690 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.210 6.210 3 C 0.132 3.868 4 N -0.305 5.305 5 C -0.045 4.045 6 C -0.247 4.247 7 C -0.098 4.098 8 C -0.236 4.236 9 C 0.107 3.893 10 C -0.519 4.519 11 H 0.095 0.905 12 C -0.177 4.177 13 N -0.436 5.436 14 Si 0.805 3.195 15 H -0.187 1.187 16 H -0.193 1.193 17 H -0.182 1.182 18 C -0.154 4.154 19 N -0.191 5.191 20 H 0.265 0.735 21 H 0.077 0.923 22 H 0.161 0.839 23 H 0.075 0.925 24 H 0.130 0.870 25 H 0.143 0.857 26 H 0.133 0.867 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.963 -5.880 -1.535 7.255 hybrid contribution 1.600 -0.454 0.023 1.664 sum -2.363 -6.334 -1.513 6.927 Atomic orbital electron populations 1.23249 0.73226 1.05585 1.02628 1.85813 1.25478 1.19952 1.89750 1.20643 0.81265 0.86886 0.97975 1.70545 1.31834 0.96306 1.31780 1.18818 0.88009 0.93971 1.03656 1.19671 0.98054 0.88993 1.17996 1.20741 0.91868 0.98876 0.98287 1.20945 0.96565 0.93411 1.12713 1.16950 0.89890 0.91641 0.90803 1.19646 0.92586 1.02346 1.37316 0.90457 1.26706 1.05354 0.93955 0.91706 1.69878 1.35351 1.16575 1.21760 0.85168 0.75576 0.79787 0.78990 1.18675 1.19269 1.18237 1.19079 0.97237 0.81899 1.17206 1.41776 1.05270 1.07025 1.65073 0.73472 0.92330 0.83875 0.92489 0.86977 0.85699 0.86741 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.13 10.63 113.37 1.21 2.34 15 2 O -0.31 -10.09 10.55 -85.81 -0.91 -11.00 15 3 C 0.44 18.22 8.88 179.75 1.60 19.81 15 4 N -0.56 -26.12 10.63 -306.50 -3.26 -29.37 15 5 C 0.07 3.64 7.22 39.36 0.28 3.93 15 6 C -0.23 -10.83 10.10 22.70 0.23 -10.60 15 7 C -0.08 -3.69 9.99 22.19 0.22 -3.47 15 8 C -0.21 -11.23 8.70 22.79 0.20 -11.03 15 9 C 0.11 5.99 5.57 -21.28 -0.12 5.87 15 10 C -0.49 -25.25 9.04 23.37 0.21 -25.04 15 11 H 0.08 3.76 7.91 -2.91 -0.02 3.74 15 12 C 0.04 1.91 5.14 85.26 0.44 2.35 15 13 N -0.81 -40.70 10.96 21.83 0.24 -40.46 15 14 Si 0.98 36.31 29.60 68.60 2.03 38.34 15 15 H -0.26 -9.45 7.11 99.48 0.71 -8.74 15 16 H -0.27 -9.44 7.11 99.48 0.71 -8.73 15 17 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 18 C -0.05 -2.48 7.03 39.37 0.28 -2.20 15 19 N -0.57 -24.93 6.23 -301.40 -1.88 -26.81 15 20 H 0.43 16.16 8.96 -92.71 -0.83 15.32 15 21 H 0.06 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.14 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.06 1.41 8.14 -2.39 -0.02 1.39 15 24 H 0.11 4.87 8.06 -2.91 -0.02 4.85 15 25 H 0.13 5.02 8.06 -2.91 -0.02 5.00 15 26 H 0.11 6.11 6.15 -2.91 -0.02 6.09 15 27 H 0.29 13.14 8.30 -92.71 -0.77 12.37 15 Total: -1.00 -62.31 243.42 1.15 -61.16 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.37 Total: 26.20 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 4.54 Total: -18.05 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -4.89 Total: -96.65 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.91 Total: -11.00 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Total: -62.31 1.15 -61.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306885035.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.077 kcal (2) G-P(sol) polarization free energy of solvation -62.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds