Wall clock time and date at job start Mon Mar 30 2020 02:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35960 * 116.99298 * 2 1 4 4 C 1.38725 * 119.64926 * 0.02562 * 3 2 1 5 5 C 1.39977 * 120.26904 * 180.02562 * 4 3 2 6 6 N 1.35832 * 133.37818 * 179.97438 * 5 4 3 7 7 C 1.30144 * 109.50869 * 180.02562 * 6 5 4 8 8 N 1.36004 * 109.98463 * 0.25705 * 7 6 5 9 9 H 0.97001 * 126.30986 * 179.71888 * 8 7 6 10 10 C 1.37455 * 107.38428 * 359.57888 * 8 7 6 11 11 C 1.41242 * 133.97528 * 180.02562 * 10 8 7 12 12 C 1.40972 * 120.30749 * 0.36253 * 11 10 8 13 13 H 1.08006 * 120.00395 * 24.61157 * 12 11 10 14 14 C 1.39962 * 120.00120 * 204.61389 * 12 11 10 15 15 N 1.30846 * 120.00088 * 17.88508 * 14 12 11 16 16 Si 1.86806 * 120.00264 * 197.88349 * 14 12 11 17 17 H 1.48494 * 109.46854 * 59.99786 * 16 14 12 18 18 H 1.48492 * 109.46994 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46841 * 300.00031 * 16 14 12 20 20 C 1.38321 * 119.64212 * 180.02562 * 3 2 1 21 21 H 1.08997 * 109.47063 * 299.99667 * 1 2 3 22 22 H 1.09001 * 109.47502 * 60.00514 * 1 2 3 23 23 H 1.09000 * 109.46682 * 180.02562 * 1 2 3 24 24 H 1.08000 * 119.86796 * 359.97438 * 4 3 2 25 25 H 1.08001 * 125.01159 * 180.02562 * 7 6 5 26 26 H 0.96994 * 119.99986 * 179.97438 * 15 14 12 27 27 H 1.08004 * 119.94170 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2833 2.3702 0.0005 5 6 1.9051 3.6243 0.0000 6 7 1.4350 4.8987 -0.0001 7 6 2.4355 5.7310 -0.0012 8 7 3.6103 5.0457 -0.0076 9 1 4.5002 5.4314 -0.0136 10 6 3.3040 3.7057 -0.0010 11 6 4.0764 2.5232 -0.0023 12 6 5.4844 2.5931 -0.0046 13 1 5.9823 3.4692 0.3842 14 6 6.2372 1.5273 -0.5107 15 7 5.6727 0.6379 -1.2868 16 14 8.0481 1.3744 -0.0783 17 1 8.1967 1.2513 1.3940 18 1 8.6140 0.1693 -0.7360 19 1 8.7732 2.5815 -0.5499 20 6 3.4279 1.2754 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2053 2.3045 0.0005 25 1 2.3462 6.8073 -0.0012 26 1 6.1945 -0.1005 -1.6379 27 1 4.0096 0.3654 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307173450.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:48 Heat of formation + Delta-G solvation = 21.268616 kcal Electronic energy + Delta-G solvation = -14169.163982 eV Core-core repulsion = 11699.648534 eV Total energy + Delta-G solvation = -2469.515449 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.77870 -38.21960 -35.37705 -33.15579 -31.77306 -28.80891 -28.25851 -26.15112 -25.17258 -21.65045 -20.73321 -20.28753 -17.65269 -16.92844 -16.20202 -15.48076 -14.95386 -14.75596 -14.15236 -13.90276 -13.29938 -13.06342 -12.30005 -11.79685 -11.65725 -11.28541 -11.18501 -11.06167 -10.68200 -10.27648 -10.11271 -9.64496 -9.46475 -8.94512 -8.89736 -7.03043 -6.94651 -6.64006 -4.45814 2.33908 2.91811 2.99353 3.01368 3.13008 3.80215 3.92821 4.07526 4.37975 4.62296 5.27302 5.52617 5.77319 5.84560 5.92401 6.02044 6.49785 6.66325 6.83481 6.92071 6.98216 7.16220 7.38624 7.78666 7.87561 8.03871 8.21556 8.43046 8.63585 8.66490 8.74723 9.07176 10.03449 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.012167 C = 0.008296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.488518 B = 2300.709480 C = 3374.197966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.326 6.326 3 C 0.156 3.844 4 C -0.300 4.300 5 C 0.099 3.901 6 N -0.522 5.522 7 C 0.212 3.788 8 N -0.584 5.584 9 H 0.412 0.588 10 C -0.041 4.041 11 C 0.156 3.844 12 C -0.458 4.458 13 H 0.076 0.924 14 C 0.077 3.923 15 N -0.771 5.771 16 Si 0.911 3.089 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.266 1.266 20 C -0.220 4.220 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.197 0.803 26 H 0.285 0.715 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.633 2.446 1.442 2.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.240 6.240 3 C 0.111 3.889 4 C -0.322 4.322 5 C -0.020 4.020 6 N -0.245 5.245 7 C -0.074 4.074 8 N -0.194 5.194 9 H 0.249 0.751 10 C -0.149 4.149 11 C 0.152 3.848 12 C -0.487 4.487 13 H 0.094 0.906 14 C -0.144 4.144 15 N -0.395 5.395 16 Si 0.735 3.265 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.190 1.190 20 C -0.242 4.242 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.101 0.899 24 H 0.120 0.880 25 H 0.213 0.787 26 H 0.097 0.903 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.393 2.197 1.280 2.900 hybrid contribution 1.803 0.181 0.039 1.812 sum 0.409 2.378 1.320 2.750 Atomic orbital electron populations 1.22775 0.80681 1.01788 1.00809 1.86025 1.19617 1.28666 1.89716 1.18585 0.92081 0.82198 0.96053 1.19308 0.97293 0.89013 1.26626 1.18368 0.89831 0.90995 1.02829 1.70284 1.30313 1.00160 1.23767 1.24827 0.80583 0.98513 1.03476 1.42667 1.08886 1.05983 1.61831 0.75150 1.19249 0.95430 0.84315 1.15885 1.16308 0.92203 0.87040 0.89270 1.19333 0.90838 1.02665 1.35847 0.90587 1.25910 1.01316 0.94583 0.92566 1.69841 1.38785 1.10397 1.20436 0.86321 0.81369 0.78700 0.80132 1.18625 1.20049 1.19049 1.20111 0.89134 0.97893 1.17050 0.93554 0.93506 0.89919 0.88021 0.78665 0.90340 0.85062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.80 101.05 0.99 1.60 15 2 O -0.33 -7.42 10.49 -19.61 -0.21 -7.63 15 3 C 0.16 3.96 6.67 -39.37 -0.26 3.70 15 4 C -0.30 -7.46 9.09 -38.75 -0.35 -7.81 15 5 C 0.10 2.51 7.22 -84.73 -0.61 1.89 15 6 N -0.52 -12.00 11.29 -12.07 -0.14 -12.14 15 7 C 0.21 3.95 12.97 -89.79 -1.16 2.79 15 8 N -0.58 -11.65 6.20 -11.40 -0.07 -11.72 15 9 H 0.41 6.82 8.96 -40.82 -0.37 6.45 15 10 C -0.04 -1.01 7.03 -83.49 -0.59 -1.60 15 11 C 0.16 4.14 5.57 -106.82 -0.60 3.54 15 12 C -0.46 -11.54 9.04 -37.90 -0.34 -11.88 15 13 H 0.08 1.77 7.91 -52.48 -0.42 1.36 15 14 C 0.08 1.85 5.13 -17.33 -0.09 1.76 15 15 N -0.77 -19.47 10.97 55.55 0.61 -18.86 15 16 Si 0.91 17.76 29.60 -169.99 -5.03 12.73 15 17 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 18 H -0.28 -5.26 7.11 56.52 0.40 -4.86 15 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 20 C -0.22 -5.91 8.61 -38.65 -0.33 -6.24 15 21 H 0.05 0.76 7.64 -51.93 -0.40 0.36 15 22 H 0.05 0.78 7.64 -51.93 -0.40 0.38 15 23 H 0.08 1.13 8.14 -51.93 -0.42 0.70 15 24 H 0.10 2.33 6.23 -52.49 -0.33 2.00 15 25 H 0.20 2.49 8.06 -52.49 -0.42 2.07 15 26 H 0.29 6.54 8.30 -40.82 -0.34 6.20 15 27 H 0.13 3.64 6.16 -52.48 -0.32 3.32 15 LS Contribution 240.02 15.07 3.62 3.62 Total: -1.00 -30.86 240.02 -6.77 -37.63 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.20 Total: 8.63 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.35 Total: -12.26 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.40 Total: -42.72 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.21 Total: -7.63 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.86 -6.77 -37.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307173450.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.901 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds