Wall clock time and date at job start Mon Mar 30 2020 02:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35960 * 116.99298 * 2 1 4 4 C 1.38725 * 119.64926 * 0.02562 * 3 2 1 5 5 C 1.39977 * 120.26904 * 180.02562 * 4 3 2 6 6 N 1.35832 * 133.37818 * 179.97438 * 5 4 3 7 7 C 1.30144 * 109.50869 * 180.02562 * 6 5 4 8 8 N 1.36004 * 109.98463 * 0.25705 * 7 6 5 9 9 H 0.97001 * 126.30986 * 179.71888 * 8 7 6 10 10 C 1.37455 * 107.38428 * 359.57888 * 8 7 6 11 11 C 1.41242 * 133.97528 * 180.02562 * 10 8 7 12 12 C 1.40972 * 120.30749 * 0.36253 * 11 10 8 13 13 H 1.08006 * 120.00395 * 24.61157 * 12 11 10 14 14 C 1.39962 * 120.00120 * 204.61389 * 12 11 10 15 15 N 1.30846 * 120.00088 * 17.88508 * 14 12 11 16 16 Si 1.86806 * 120.00264 * 197.88349 * 14 12 11 17 17 H 1.48494 * 109.46854 * 59.99786 * 16 14 12 18 18 H 1.48492 * 109.46994 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46841 * 300.00031 * 16 14 12 20 20 C 1.38321 * 119.64212 * 180.02562 * 3 2 1 21 21 H 1.08997 * 109.47063 * 299.99667 * 1 2 3 22 22 H 1.09001 * 109.47502 * 60.00514 * 1 2 3 23 23 H 1.09000 * 109.46682 * 180.02562 * 1 2 3 24 24 H 1.08000 * 119.86796 * 359.97438 * 4 3 2 25 25 H 1.08001 * 125.01159 * 180.02562 * 7 6 5 26 26 H 0.96994 * 119.99986 * 179.97438 * 15 14 12 27 27 H 1.08004 * 119.94170 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2833 2.3702 0.0005 5 6 1.9051 3.6243 0.0000 6 7 1.4350 4.8987 -0.0001 7 6 2.4355 5.7310 -0.0012 8 7 3.6103 5.0457 -0.0076 9 1 4.5002 5.4314 -0.0136 10 6 3.3040 3.7057 -0.0010 11 6 4.0764 2.5232 -0.0023 12 6 5.4844 2.5931 -0.0046 13 1 5.9823 3.4692 0.3842 14 6 6.2372 1.5273 -0.5107 15 7 5.6727 0.6379 -1.2868 16 14 8.0481 1.3744 -0.0783 17 1 8.1967 1.2513 1.3940 18 1 8.6140 0.1693 -0.7360 19 1 8.7732 2.5815 -0.5499 20 6 3.4279 1.2754 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2053 2.3045 0.0005 25 1 2.3462 6.8073 -0.0012 26 1 6.1945 -0.1005 -1.6379 27 1 4.0096 0.3654 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307173450.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:47 Heat of formation + Delta-G solvation = 0.979692 kcal Electronic energy + Delta-G solvation = -14170.043776 eV Core-core repulsion = 11699.648534 eV Total energy + Delta-G solvation = -2470.395242 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.49430 -39.95945 -37.19504 -34.96630 -33.51817 -30.64697 -29.96868 -27.76351 -26.99055 -23.38628 -22.53490 -22.02438 -19.42009 -18.62714 -18.02356 -17.24039 -16.64819 -16.39084 -15.82216 -15.58905 -14.95098 -14.74285 -13.99343 -13.55692 -13.39440 -12.94891 -12.79328 -12.66044 -12.35612 -11.96967 -11.86592 -11.42328 -11.17056 -10.74806 -10.66090 -8.89151 -8.77488 -8.47655 -6.38117 0.56900 1.16269 1.38751 1.47912 1.53054 2.15159 2.23045 2.50802 2.74774 2.81767 3.61299 3.78198 4.29977 4.47324 4.48154 4.63932 4.76653 4.87280 5.04905 5.10112 5.17295 5.36068 5.54005 5.90126 5.96915 6.17644 6.33530 6.71730 6.78532 6.86988 7.01128 7.33379 8.24955 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.012167 C = 0.008296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.488518 B = 2300.709480 C = 3374.197966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.344 6.344 3 C 0.153 3.847 4 C -0.315 4.315 5 C 0.077 3.923 6 N -0.556 5.556 7 C 0.247 3.753 8 N -0.575 5.575 9 H 0.428 0.572 10 C -0.069 4.069 11 C 0.136 3.864 12 C -0.480 4.480 13 H 0.090 0.910 14 C 0.035 3.965 15 N -0.806 5.806 16 Si 0.989 3.011 17 H -0.260 1.260 18 H -0.270 1.270 19 H -0.253 1.253 20 C -0.256 4.256 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.121 0.879 24 H 0.114 0.886 25 H 0.262 0.738 26 H 0.292 0.708 27 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 3.966 1.673 4.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.107 3.893 4 C -0.338 4.338 5 C -0.041 4.041 6 N -0.280 5.280 7 C -0.039 4.039 8 N -0.186 5.186 9 H 0.268 0.732 10 C -0.178 4.178 11 C 0.132 3.868 12 C -0.508 4.508 13 H 0.108 0.892 14 C -0.183 4.183 15 N -0.430 5.430 16 Si 0.809 3.191 17 H -0.184 1.184 18 H -0.194 1.194 19 H -0.177 1.177 20 C -0.278 4.278 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.139 0.861 24 H 0.132 0.868 25 H 0.277 0.723 26 H 0.103 0.897 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.676 3.726 1.508 4.076 hybrid contribution 1.481 -0.218 -0.051 1.498 sum 0.804 3.508 1.457 3.883 Atomic orbital electron populations 1.23126 0.77768 1.04530 1.01273 1.85984 1.22642 1.27765 1.89488 1.18631 0.91923 0.83219 0.95556 1.19500 0.97943 0.89129 1.27188 1.18740 0.90487 0.92138 1.02776 1.70305 1.31984 0.99504 1.26257 1.26086 0.78945 1.00539 0.98357 1.42667 1.10370 1.04299 1.61270 0.73207 1.19274 0.95340 0.85922 1.17255 1.16631 0.93234 0.87673 0.89274 1.19692 0.90813 1.03948 1.36386 0.89247 1.26887 1.06122 0.93600 0.91675 1.69924 1.40906 1.11002 1.21139 0.85149 0.75130 0.79203 0.79668 1.18448 1.19402 1.17660 1.20089 0.90014 0.97682 1.20050 0.92834 0.93201 0.86082 0.86782 0.72272 0.89687 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.80 113.37 1.11 2.04 15 2 O -0.34 -16.05 10.49 -93.10 -0.98 -17.02 15 3 C 0.15 8.02 6.67 22.41 0.15 8.17 15 4 C -0.31 -15.99 9.09 22.81 0.21 -15.79 15 5 C 0.08 3.94 7.22 39.40 0.28 4.23 15 6 N -0.56 -24.67 11.29 -192.11 -2.17 -26.84 15 7 C 0.25 8.36 12.97 180.06 2.34 10.69 15 8 N -0.58 -21.78 6.20 -189.98 -1.18 -22.95 15 9 H 0.43 13.09 8.96 -92.71 -0.83 12.26 15 10 C -0.07 -3.45 7.03 39.46 0.28 -3.18 15 11 C 0.14 7.42 5.57 -21.29 -0.12 7.30 15 12 C -0.48 -24.43 9.04 23.36 0.21 -24.22 15 13 H 0.09 4.13 7.91 -2.91 -0.02 4.10 15 14 C 0.04 1.69 5.13 85.26 0.44 2.13 15 15 N -0.81 -41.71 10.97 21.83 0.24 -41.47 15 16 Si 0.99 35.94 29.60 68.60 2.03 37.97 15 17 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 18 H -0.27 -9.44 7.11 99.48 0.71 -8.73 15 19 H -0.25 -8.61 7.11 99.48 0.71 -7.90 15 20 C -0.26 -14.42 8.61 22.87 0.20 -14.22 15 21 H 0.05 1.72 7.64 -2.39 -0.02 1.70 15 22 H 0.05 1.64 7.64 -2.39 -0.02 1.62 15 23 H 0.12 3.09 8.14 -2.39 -0.02 3.07 15 24 H 0.11 5.29 6.23 -2.91 -0.02 5.27 15 25 H 0.26 5.04 8.06 -2.91 -0.02 5.02 15 26 H 0.29 13.65 8.30 -92.71 -0.77 12.89 15 27 H 0.11 6.53 6.16 -2.91 -0.02 6.51 15 Total: -1.00 -69.40 240.02 3.42 -65.98 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.38 Total: 27.19 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 5.09 Total: -22.84 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -3.11 Total: -91.27 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.98 Total: -17.02 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -69.40 3.42 -65.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307173450.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.959 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds