Wall clock time and date at job start Mon Mar 30 2020 02:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35667 * 117.00182 * 2 1 4 4 C 1.38751 * 120.32701 * 269.98393 * 3 2 1 5 5 N 1.38381 * 133.91739 * 0.04015 * 4 3 2 6 6 H 0.97006 * 126.45993 * 0.02562 * 5 4 3 7 7 C 1.35817 * 107.08002 * 179.97438 * 5 4 3 8 8 N 1.30338 * 110.06699 * 0.02562 * 7 5 4 9 9 C 1.34842 * 109.88918 * 359.97438 * 8 7 5 10 10 C 1.40694 * 133.13834 * 180.02562 * 9 8 7 11 11 C 1.35674 * 120.37725 * 179.97438 * 10 9 8 12 12 C 1.41211 * 120.48214 * 359.97438 * 11 10 9 13 13 C 1.40905 * 120.09818 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00318 * 205.11412 * 13 12 11 15 15 C 1.39874 * 119.99763 * 25.12006 * 13 12 11 16 16 N 1.30933 * 120.00058 * 17.82832 * 15 13 12 17 17 Si 1.86797 * 119.99803 * 197.83085 * 15 13 12 18 18 H 1.48505 * 109.47166 * 59.99879 * 17 15 13 19 19 H 1.48498 * 109.47028 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47193 * 299.99672 * 17 15 13 21 21 H 1.09001 * 109.46903 * 299.99444 * 1 2 3 22 22 H 1.09002 * 109.47411 * 59.99735 * 1 2 3 23 23 H 1.09001 * 109.47337 * 179.97438 * 1 2 3 24 24 H 1.07998 * 124.97091 * 180.02562 * 7 5 4 25 25 H 1.08007 * 119.81460 * 359.97438 * 10 9 8 26 26 H 1.07993 * 119.76379 * 180.02562 * 11 10 9 27 27 H 0.96994 * 120.00064 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 2.3633 1.8329 -1.1976 5 7 2.1925 1.4982 -2.5295 6 1 1.7796 0.6901 -2.8724 7 6 2.7106 2.5150 -3.2659 8 7 3.1834 3.4408 -2.4797 9 6 3.0023 3.0854 -1.1917 10 6 3.3186 3.7055 0.0310 11 6 3.0103 3.1019 1.2063 12 6 2.3679 1.8444 1.2190 13 6 2.0510 1.2251 2.4443 14 1 1.9482 0.1513 2.4960 15 6 1.8696 2.0012 3.5938 16 7 1.6459 3.2868 3.4871 17 14 1.9464 1.2033 5.2810 18 1 3.2813 0.5822 5.4746 19 1 1.7244 2.2342 6.3266 20 1 0.8951 0.1594 5.3833 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 2.7284 2.5511 -4.3451 25 1 3.8096 4.6675 0.0340 26 1 3.2573 3.5870 2.1391 27 1 1.5204 3.8251 4.2842 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307287950.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:12 Heat of formation + Delta-G solvation = 22.218661 kcal Electronic energy + Delta-G solvation = -14337.277575 eV Core-core repulsion = 11867.803323 eV Total energy + Delta-G solvation = -2469.474252 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.78916 -37.52138 -35.52879 -33.30311 -31.56396 -29.03538 -28.23136 -26.08565 -24.74873 -21.45151 -21.12757 -20.10494 -17.86357 -17.02673 -15.94905 -15.41474 -14.67326 -14.30938 -14.27865 -13.73956 -13.60322 -12.96914 -12.50215 -12.00882 -11.44266 -11.30423 -11.07505 -10.94293 -10.49098 -10.15902 -9.96774 -9.51763 -9.15275 -9.09913 -8.72178 -7.24554 -7.11200 -6.78983 -4.44637 2.23634 2.88483 2.98461 3.01253 3.06782 3.76300 3.79956 4.00527 4.56677 4.98647 5.33902 5.59077 5.89347 6.05898 6.19250 6.42938 6.44133 6.64748 6.70581 6.86846 7.01266 7.21486 7.54157 7.61658 7.85237 8.02138 8.25420 8.44423 8.55366 8.65676 8.87586 9.16324 9.93795 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.039461 B = 0.010330 C = 0.008558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.390184 B = 2709.787238 C = 3270.817678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C -0.084 4.084 4 C 0.094 3.906 5 N -0.610 5.610 6 H 0.410 0.590 7 C 0.173 3.827 8 N -0.484 5.484 9 C -0.048 4.048 10 C -0.068 4.068 11 C -0.127 4.127 12 C 0.124 3.876 13 C -0.429 4.429 14 H 0.089 0.911 15 C 0.072 3.928 16 N -0.780 5.780 17 Si 0.916 3.084 18 H -0.260 1.260 19 H -0.277 1.277 20 H -0.263 1.263 21 H 0.043 0.957 22 H 0.019 0.981 23 H 0.068 0.932 24 H 0.193 0.807 25 H 0.102 0.898 26 H 0.130 0.870 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.482 -2.918 -2.774 4.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C -0.133 4.133 4 C -0.016 4.016 5 N -0.223 5.223 6 H 0.246 0.754 7 C -0.111 4.111 8 N -0.204 5.204 9 C -0.166 4.166 10 C -0.088 4.088 11 C -0.148 4.148 12 C 0.119 3.881 13 C -0.457 4.457 14 H 0.107 0.893 15 C -0.148 4.148 16 N -0.404 5.404 17 Si 0.740 3.260 18 H -0.184 1.184 19 H -0.201 1.201 20 H -0.188 1.188 21 H 0.062 0.938 22 H 0.038 0.962 23 H 0.086 0.914 24 H 0.210 0.790 25 H 0.120 0.880 26 H 0.148 0.852 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.027 -2.018 -2.845 3.636 hybrid contribution -0.944 -1.170 0.658 1.641 sum -1.971 -3.188 -2.187 4.339 Atomic orbital electron populations 1.22817 0.84173 1.00150 0.99451 1.86044 1.16997 1.26470 1.94088 1.17191 1.14042 0.93508 0.88607 1.19168 1.02262 0.96428 0.83715 1.42878 1.53421 1.20468 1.05578 0.75392 1.24516 1.02202 0.86539 0.97839 1.69733 1.21647 1.27631 1.01436 1.18445 1.11940 0.94968 0.91296 1.19730 1.00795 0.98619 0.89627 1.20972 1.00294 0.96791 0.96733 1.17576 0.88770 0.90548 0.91157 1.19532 1.38950 0.95701 0.91513 0.89286 1.26087 0.91957 0.94631 1.02094 1.69856 1.31119 1.06793 1.32639 0.86219 0.80366 0.79764 0.79661 1.18439 1.20141 1.18752 0.93797 0.96222 0.91369 0.79021 0.88026 0.85200 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.13 101.05 1.12 1.71 15 2 O -0.32 -7.51 9.70 -18.70 -0.18 -7.69 15 3 C -0.08 -2.12 5.77 -38.26 -0.22 -2.34 15 4 C 0.09 2.26 7.23 -83.82 -0.61 1.66 15 5 N -0.61 -11.85 6.25 -11.68 -0.07 -11.92 15 6 H 0.41 6.54 8.96 -40.82 -0.37 6.17 15 7 C 0.17 3.22 12.97 -89.80 -1.16 2.06 15 8 N -0.48 -11.05 11.23 -12.00 -0.13 -11.19 15 9 C -0.05 -1.20 7.22 -84.72 -0.61 -1.81 15 10 C -0.07 -1.66 10.02 -39.57 -0.40 -2.05 15 11 C -0.13 -3.23 8.59 -39.37 -0.34 -3.57 15 12 C 0.12 3.26 5.58 -106.63 -0.60 2.66 15 13 C -0.43 -10.92 8.69 -37.96 -0.33 -11.25 15 14 H 0.09 2.25 7.64 -52.49 -0.40 1.85 15 15 C 0.07 1.71 5.12 -17.32 -0.09 1.62 15 16 N -0.78 -18.86 10.98 55.55 0.61 -18.25 15 17 Si 0.92 17.66 29.60 -169.99 -5.03 12.62 15 18 H -0.26 -5.00 7.11 56.52 0.40 -4.60 15 19 H -0.28 -5.16 7.11 56.52 0.40 -4.76 15 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 21 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 22 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 23 H 0.07 1.11 8.14 -51.93 -0.42 0.68 15 24 H 0.19 2.52 8.06 -52.49 -0.42 2.10 15 25 H 0.10 2.26 8.06 -52.48 -0.42 1.84 15 26 H 0.13 3.27 6.16 -52.49 -0.32 2.94 15 27 H 0.29 6.27 8.30 -40.82 -0.34 5.93 15 LS Contribution 243.00 15.07 3.66 3.66 Total: -1.00 -29.42 243.00 -6.71 -36.14 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -2.34 Total: 7.95 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -3.23 Total: -11.32 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.40 Total: -41.36 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.18 Total: -7.69 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.42 -6.71 -36.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307287950.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.354 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds