Wall clock time and date at job start Mon Mar 30 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35880 * 116.99948 * 2 1 4 4 C 1.36271 * 119.94148 * 359.97388 * 3 2 1 5 5 C 1.41076 * 120.37689 * 180.02562 * 4 3 2 6 6 C 1.41085 * 120.01640 * 180.28028 * 5 4 3 7 7 H 1.08000 * 120.00297 * 154.29780 * 6 5 4 8 8 C 1.39889 * 119.99639 * 334.29878 * 6 5 4 9 9 N 1.30874 * 120.00185 * 342.54944 * 8 6 5 10 10 Si 1.86798 * 120.00106 * 162.54847 * 8 6 5 11 11 H 1.48511 * 109.46971 * 59.99699 * 10 8 6 12 12 H 1.48497 * 109.47572 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47295 * 300.00191 * 10 8 6 14 14 C 1.40702 * 119.96965 * 0.02562 * 5 4 3 15 15 C 1.38058 * 119.59003 * 359.97438 * 14 5 4 16 16 N 1.38309 * 133.92226 * 179.97438 * 15 14 5 17 17 H 0.97002 * 126.45320 * 0.05305 * 16 15 14 18 18 C 1.35975 * 107.09487 * 180.02562 * 16 15 14 19 19 N 1.30343 * 110.09752 * 0.02562 * 18 16 15 20 20 C 1.34774 * 109.89143 * 0.02562 * 19 18 16 21 21 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47235 * 300.00472 * 1 2 3 23 23 H 1.09002 * 109.46913 * 59.99815 * 1 2 3 24 24 H 1.08001 * 119.80890 * 0.02631 * 4 3 2 25 25 H 0.97000 * 120.00244 * 180.02562 * 9 8 6 26 26 H 1.07998 * 120.20824 * 180.02562 * 14 5 4 27 27 H 1.07999 * 124.95159 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.3025 2.3528 -0.0005 5 6 1.9334 3.6146 -0.0011 6 6 1.1564 4.7922 0.0043 7 1 1.5641 5.7064 0.4098 8 6 -0.1422 4.7756 -0.5155 9 7 -0.5199 3.8001 -1.3020 10 14 -1.3374 6.1458 -0.0870 11 1 -0.7844 7.4460 -0.5443 12 1 -2.6375 5.8971 -0.7600 13 1 -1.5401 6.1839 1.3836 14 6 3.3380 3.6982 -0.0016 15 6 4.0898 2.5403 -0.0011 16 7 5.4478 2.2781 -0.0018 17 1 6.1616 2.9350 -0.0022 18 6 5.5939 0.9263 -0.0012 19 7 4.4251 0.3495 -0.0007 20 6 3.4530 1.2830 -0.0015 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2243 2.2916 -0.0005 25 1 -1.4202 3.7888 -1.6627 26 1 3.8249 4.6622 -0.0016 27 1 6.5405 0.4063 -0.0012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307307072.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:11 Heat of formation + Delta-G solvation = 22.424974 kcal Electronic energy + Delta-G solvation = -14215.033350 eV Core-core repulsion = 11745.568045 eV Total energy + Delta-G solvation = -2469.465305 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.74751 -38.15517 -35.64140 -33.02375 -31.76178 -28.92732 -27.99753 -26.67355 -24.88915 -21.31774 -20.99945 -20.19570 -18.15595 -16.64018 -16.10102 -15.37982 -14.84239 -14.75405 -14.23987 -13.77828 -13.60897 -12.82158 -12.39721 -12.03175 -11.53170 -11.27946 -11.16576 -10.93646 -10.59026 -10.24710 -9.95210 -9.79822 -9.26476 -9.04075 -8.91916 -7.22462 -6.99871 -6.48894 -4.47307 2.38092 2.92199 2.99301 3.02060 3.11343 3.80347 3.92721 3.97804 4.38770 4.60225 5.36690 5.55452 5.87717 5.95518 5.97433 6.18327 6.54175 6.70703 6.80270 6.85357 6.94571 7.10217 7.41362 7.80844 7.82514 8.04199 8.20593 8.42308 8.58365 8.70199 8.76578 9.14616 10.01791 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.034254 B = 0.010287 C = 0.008114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.228269 B = 2721.132625 C = 3449.856350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.321 6.321 3 C 0.176 3.824 4 C -0.234 4.234 5 C 0.164 3.836 6 C -0.450 4.450 7 H 0.083 0.917 8 C 0.077 3.923 9 N -0.786 5.786 10 Si 0.912 3.088 11 H -0.264 1.264 12 H -0.277 1.277 13 H -0.262 1.262 14 C -0.292 4.292 15 C 0.130 3.870 16 N -0.621 5.621 17 H 0.410 0.590 18 C 0.167 3.833 19 N -0.467 5.467 20 C -0.073 4.073 21 H 0.082 0.918 22 H 0.046 0.954 23 H 0.057 0.943 24 H 0.137 0.863 25 H 0.284 0.716 26 H 0.095 0.905 27 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 -0.337 1.529 2.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.234 6.234 3 C 0.130 3.870 4 C -0.256 4.256 5 C 0.160 3.840 6 C -0.479 4.479 7 H 0.101 0.899 8 C -0.143 4.143 9 N -0.410 5.410 10 Si 0.736 3.264 11 H -0.188 1.188 12 H -0.202 1.202 13 H -0.186 1.186 14 C -0.317 4.317 15 C 0.021 3.979 16 N -0.236 5.236 17 H 0.246 0.754 18 C -0.117 4.117 19 N -0.186 5.186 20 C -0.190 4.190 21 H 0.101 0.899 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.155 0.845 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.459 -1.591 1.373 2.559 hybrid contribution -0.184 1.921 0.034 1.930 sum 1.276 0.330 1.407 1.927 Atomic orbital electron populations 1.22853 0.80024 1.01798 1.01564 1.86000 1.19956 1.28378 1.89115 1.17760 0.88077 0.84056 0.97149 1.21074 1.00201 0.90890 1.13400 1.17044 0.89797 0.92314 0.84884 1.19510 0.97112 0.96793 1.34468 0.89880 1.25987 0.98837 0.97009 0.92430 1.69846 1.19662 1.30561 1.20976 0.86293 0.78834 0.81184 0.80060 1.18812 1.20184 1.18615 1.19560 0.92831 0.93049 1.26248 1.18489 0.82338 0.96097 1.00930 1.42862 1.06158 1.08097 1.66509 0.75382 1.24526 0.98122 0.80291 1.08746 1.69687 0.97656 1.33317 1.17979 1.17549 0.90641 0.88941 1.21913 0.89918 0.93535 0.92470 0.84538 0.90514 0.88719 0.79002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.80 101.05 0.99 1.62 15 2 O -0.32 -7.69 10.50 -19.36 -0.20 -7.89 15 3 C 0.18 4.56 6.69 -39.28 -0.26 4.30 15 4 C -0.23 -6.11 7.60 -39.21 -0.30 -6.41 15 5 C 0.16 4.34 5.56 -106.81 -0.59 3.74 15 6 C -0.45 -11.46 9.02 -37.88 -0.34 -11.80 15 7 H 0.08 2.01 7.90 -52.49 -0.41 1.60 15 8 C 0.08 1.83 5.13 -17.34 -0.09 1.74 15 9 N -0.79 -19.26 10.98 55.54 0.61 -18.65 15 10 Si 0.91 17.65 29.59 -169.99 -5.03 12.62 15 11 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 12 H -0.28 -5.21 7.11 56.52 0.40 -4.81 15 13 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 14 C -0.29 -7.28 9.81 -38.72 -0.38 -7.66 15 15 C 0.13 3.13 7.28 -83.99 -0.61 2.52 15 16 N -0.62 -11.76 6.25 -11.75 -0.07 -11.84 15 17 H 0.41 5.95 8.96 -40.82 -0.37 5.59 15 18 C 0.17 3.17 12.97 -89.65 -1.16 2.00 15 19 N -0.47 -11.17 11.23 -11.84 -0.13 -11.30 15 20 C -0.07 -1.89 7.17 -84.55 -0.61 -2.49 15 21 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 22 H 0.05 0.84 7.64 -51.93 -0.40 0.45 15 23 H 0.06 1.10 7.64 -51.93 -0.40 0.71 15 24 H 0.14 3.48 4.31 -52.49 -0.23 3.25 15 25 H 0.28 6.28 8.30 -40.82 -0.34 5.95 15 26 H 0.09 2.19 8.06 -52.49 -0.42 1.77 15 27 H 0.19 2.57 8.06 -52.49 -0.42 2.15 15 LS Contribution 239.93 15.07 3.62 3.62 Total: -1.00 -30.92 239.93 -6.77 -37.69 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -2.20 Total: 8.19 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -3.35 Total: -12.43 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.40 Total: -41.79 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.20 Total: -7.89 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.92 -6.77 -37.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307307072.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.119 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds