Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35861 * 117.00053 * 2 1 4 4 C 1.39346 * 119.74480 * 0.02691 * 3 2 1 5 5 C 1.36485 * 120.55090 * 179.97438 * 4 3 2 6 6 C 1.39901 * 119.85894 * 0.04844 * 5 4 3 7 7 C 1.46049 * 133.83903 * 179.97438 * 6 5 4 8 8 N 1.30490 * 107.87935 * 179.71027 * 7 6 5 9 9 N 1.39876 * 110.09887 * 0.40598 * 8 7 6 10 10 C 1.36992 * 125.50368 * 179.84383 * 9 8 7 11 11 H 1.08005 * 119.99363 * 188.12640 * 10 9 8 12 12 C 1.38888 * 120.00073 * 8.12493 * 10 9 8 13 13 N 1.31398 * 119.99882 * 194.04075 * 12 10 9 14 14 Si 1.86803 * 120.00154 * 14.31876 * 12 10 9 15 15 H 1.48501 * 109.47105 * 269.72312 * 14 12 10 16 16 H 1.48500 * 109.46840 * 29.72332 * 14 12 10 17 17 H 1.48504 * 109.47090 * 149.72090 * 14 12 10 18 18 C 1.37704 * 108.98855 * 359.58422 * 9 8 7 19 19 C 1.38384 * 119.74607 * 180.02562 * 3 2 1 20 20 H 1.09001 * 109.46374 * 299.99350 * 1 2 3 21 21 H 1.08994 * 109.47026 * 59.99616 * 1 2 3 22 22 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 23 23 H 1.07995 * 119.72247 * 359.97438 * 4 3 2 24 24 H 1.08011 * 120.07266 * 179.97438 * 5 4 3 25 25 H 1.08001 * 126.06487 * 359.93458 * 7 6 5 26 26 H 0.96999 * 119.99859 * 355.03204 * 13 12 10 27 27 H 1.08001 * 120.14773 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2105 0.0000 4 6 1.2818 2.3758 0.0006 5 6 1.8842 3.6005 0.0011 6 6 3.2804 3.6899 0.0001 7 6 4.2226 4.8058 -0.0002 8 7 5.4299 4.3108 0.0049 9 7 5.3763 2.9131 -0.0005 10 6 6.4603 2.0753 -0.0004 11 1 6.3216 1.0130 -0.1371 12 6 7.7374 2.5922 0.1755 13 7 8.7887 1.8518 -0.0951 14 14 7.9605 4.3371 0.8039 15 1 8.0152 5.2744 -0.3466 16 1 6.8180 4.6969 1.6817 17 1 9.2257 4.4270 1.5763 18 6 4.0580 2.5152 -0.0002 19 6 3.4281 1.2768 -0.0005 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 0.2039 2.3093 0.0006 24 1 1.2844 4.4987 0.0011 25 1 3.9657 5.8548 -0.0006 26 1 8.6752 0.9224 -0.3482 27 1 4.0147 0.3699 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307426888.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = 45.741068 kcal Electronic energy + Delta-G solvation = -14068.846134 eV Core-core repulsion = 11600.391890 eV Total energy + Delta-G solvation = -2468.454244 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.33029 -38.77344 -35.37650 -33.59655 -31.57052 -29.51104 -28.51870 -26.72446 -24.55997 -22.34620 -21.00375 -20.45558 -18.13087 -17.22236 -16.09169 -15.76040 -15.36790 -14.96137 -14.17449 -13.83215 -13.48348 -13.11514 -12.89176 -12.36917 -11.94637 -11.78280 -11.66980 -10.98183 -10.73891 -10.24251 -10.13230 -10.05687 -9.63740 -8.87268 -8.79748 -7.53487 -7.33022 -7.25205 -4.32241 1.75583 2.31565 3.32002 3.43515 3.49940 3.61360 3.79573 4.07923 4.25515 4.48852 4.96202 5.20308 5.32912 5.38927 5.44698 5.60058 5.73987 5.78340 6.08892 6.16896 6.58291 6.72693 6.85721 7.04367 7.23157 7.37850 7.49457 7.88775 7.97813 8.27067 8.83293 9.11271 10.14982 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.045384 B = 0.009143 C = 0.007727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.807410 B = 3061.601433 C = 3622.606658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.324 6.324 3 C 0.127 3.873 4 C -0.254 4.254 5 C -0.007 4.007 6 C -0.223 4.223 7 C 0.011 3.989 8 N -0.301 5.301 9 N -0.186 5.186 10 C -0.377 4.377 11 H 0.114 0.886 12 C 0.034 3.966 13 N -0.835 5.835 14 Si 1.114 2.886 15 H -0.280 1.280 16 H -0.273 1.273 17 H -0.309 1.309 18 C 0.088 3.912 19 C -0.150 4.150 20 H 0.050 0.950 21 H 0.050 0.950 22 H 0.090 0.910 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.177 0.823 26 H 0.280 0.720 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.951 0.998 0.649 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.238 6.238 3 C 0.080 3.920 4 C -0.275 4.275 5 C -0.028 4.028 6 C -0.233 4.233 7 C -0.172 4.172 8 N -0.125 5.125 9 N 0.044 4.956 10 C -0.508 4.508 11 H 0.131 0.869 12 C -0.180 4.180 13 N -0.463 5.463 14 Si 0.944 3.056 15 H -0.207 1.207 16 H -0.200 1.200 17 H -0.239 1.239 18 C -0.035 4.035 19 C -0.172 4.172 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.109 0.891 23 H 0.134 0.866 24 H 0.133 0.867 25 H 0.194 0.806 26 H 0.091 0.909 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.318 2.139 0.951 10.581 hybrid contribution -2.182 -1.515 -0.455 2.695 sum -12.501 0.624 0.496 12.526 Atomic orbital electron populations 1.22898 0.79447 1.02856 1.00962 1.85983 1.20467 1.27705 1.89639 1.18363 0.91101 0.83452 0.99087 1.20403 0.98688 0.92237 1.16148 1.19865 0.91984 0.96347 0.94582 1.19458 0.93548 0.92260 1.18014 1.24359 0.88518 0.98053 1.06273 1.75756 1.22416 0.89918 1.24418 1.44638 1.03162 1.01811 1.45969 1.21033 0.84671 0.91402 1.53681 0.86851 1.26869 0.89791 1.08531 0.92772 1.70893 1.30956 1.09611 1.34799 0.82745 0.73474 0.71774 0.77653 1.20678 1.20007 1.23865 1.18078 0.85018 0.93984 1.06445 1.18766 0.90759 0.95477 1.12240 0.93121 0.93125 0.89111 0.86561 0.86666 0.80581 0.90863 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.80 101.05 0.99 1.38 15 2 O -0.32 -5.56 10.48 -19.30 -0.20 -5.76 15 3 C 0.13 2.45 6.69 -39.12 -0.26 2.19 15 4 C -0.25 -4.33 8.96 -39.80 -0.36 -4.69 15 5 C -0.01 -0.13 10.05 -39.59 -0.40 -0.52 15 6 C -0.22 -4.81 6.36 -105.15 -0.67 -5.48 15 7 C 0.01 0.23 12.29 -14.99 -0.18 0.04 15 8 N -0.30 -7.60 7.14 31.94 0.23 -7.37 15 9 N -0.19 -4.99 3.62 -9.51 -0.03 -5.02 15 10 C -0.38 -10.51 10.43 -15.01 -0.16 -10.66 15 11 H 0.11 3.16 8.05 -52.48 -0.42 2.73 15 12 C 0.03 0.95 5.50 -17.50 -0.10 0.85 15 13 N -0.83 -23.44 13.69 55.49 0.76 -22.68 15 14 Si 1.11 27.43 26.21 -169.99 -4.45 22.97 15 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 16 H -0.27 -6.71 6.39 56.52 0.36 -6.35 15 17 H -0.31 -7.40 7.11 56.52 0.40 -7.00 15 18 C 0.09 2.14 6.81 -83.97 -0.57 1.57 15 19 C -0.15 -3.34 9.91 -39.27 -0.39 -3.73 15 20 H 0.05 0.53 7.64 -51.93 -0.40 0.14 15 21 H 0.05 0.53 7.64 -51.93 -0.40 0.14 15 22 H 0.09 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.12 1.58 6.24 -52.49 -0.33 1.25 15 24 H 0.12 1.61 8.06 -52.48 -0.42 1.19 15 25 H 0.18 2.89 8.06 -52.49 -0.42 2.47 15 26 H 0.28 7.57 8.73 -40.82 -0.36 7.21 15 27 H 0.12 2.62 8.05 -52.49 -0.42 2.20 15 LS Contribution 239.16 15.07 3.60 3.60 Total: -1.00 -30.70 239.16 -4.62 -35.32 By element: Atomic # 1 Polarization: 0.40 SS G_CDS: -2.43 Total: -2.02 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -2.09 Total: -19.04 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.95 Total: -35.07 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.20 Total: -5.76 kcal Atomic # 14 Polarization: 27.43 SS G_CDS: -4.45 Total: 22.97 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.70 -4.62 -35.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426888.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.064 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds