Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35861 * 117.00053 * 2 1 4 4 C 1.39346 * 119.74480 * 0.02691 * 3 2 1 5 5 C 1.36485 * 120.55090 * 179.97438 * 4 3 2 6 6 C 1.39901 * 119.85894 * 0.04844 * 5 4 3 7 7 C 1.46049 * 133.83903 * 179.97438 * 6 5 4 8 8 N 1.30490 * 107.87935 * 179.71027 * 7 6 5 9 9 N 1.39876 * 110.09887 * 0.40598 * 8 7 6 10 10 C 1.36992 * 125.50368 * 179.84383 * 9 8 7 11 11 H 1.08005 * 119.99363 * 188.12640 * 10 9 8 12 12 C 1.38888 * 120.00073 * 8.12493 * 10 9 8 13 13 N 1.31398 * 119.99882 * 194.04075 * 12 10 9 14 14 Si 1.86803 * 120.00154 * 14.31876 * 12 10 9 15 15 H 1.48501 * 109.47105 * 269.72312 * 14 12 10 16 16 H 1.48500 * 109.46840 * 29.72332 * 14 12 10 17 17 H 1.48504 * 109.47090 * 149.72090 * 14 12 10 18 18 C 1.37704 * 108.98855 * 359.58422 * 9 8 7 19 19 C 1.38384 * 119.74607 * 180.02562 * 3 2 1 20 20 H 1.09001 * 109.46374 * 299.99350 * 1 2 3 21 21 H 1.08994 * 109.47026 * 59.99616 * 1 2 3 22 22 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 23 23 H 1.07995 * 119.72247 * 359.97438 * 4 3 2 24 24 H 1.08011 * 120.07266 * 179.97438 * 5 4 3 25 25 H 1.08001 * 126.06487 * 359.93458 * 7 6 5 26 26 H 0.96999 * 119.99859 * 355.03204 * 13 12 10 27 27 H 1.08001 * 120.14773 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2105 0.0000 4 6 1.2818 2.3758 0.0006 5 6 1.8842 3.6005 0.0011 6 6 3.2804 3.6899 0.0001 7 6 4.2226 4.8058 -0.0002 8 7 5.4299 4.3108 0.0049 9 7 5.3763 2.9131 -0.0005 10 6 6.4603 2.0753 -0.0004 11 1 6.3216 1.0130 -0.1371 12 6 7.7374 2.5922 0.1755 13 7 8.7887 1.8518 -0.0951 14 14 7.9605 4.3371 0.8039 15 1 8.0152 5.2744 -0.3466 16 1 6.8180 4.6969 1.6817 17 1 9.2257 4.4270 1.5763 18 6 4.0580 2.5152 -0.0002 19 6 3.4281 1.2768 -0.0005 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 0.2039 2.3093 0.0006 24 1 1.2844 4.4987 0.0011 25 1 3.9657 5.8548 -0.0006 26 1 8.6752 0.9224 -0.3482 27 1 4.0147 0.3699 -0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307426888.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = 24.961999 kcal Electronic energy + Delta-G solvation = -14069.747182 eV Core-core repulsion = 11600.391890 eV Total energy + Delta-G solvation = -2469.355292 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.02651 -40.23199 -36.94280 -35.50450 -33.33935 -31.10028 -30.10862 -27.91031 -26.40847 -23.93815 -22.67338 -22.15636 -19.95557 -18.79990 -17.79595 -17.24278 -16.62062 -16.48204 -15.94693 -15.58524 -15.35354 -14.68223 -14.32753 -14.11054 -13.48266 -13.18043 -13.00445 -12.68861 -12.38328 -12.05633 -11.73914 -11.61646 -11.44379 -10.76083 -10.64688 -9.40656 -9.17846 -8.93472 -6.37734 0.18266 0.71816 1.42291 1.51282 1.77170 1.86001 1.98045 2.30633 2.57851 2.78485 3.05173 3.84417 4.01603 4.09957 4.25381 4.38418 4.49146 4.58220 4.69894 4.77490 4.92523 5.08801 5.34313 5.36544 5.52238 5.60771 5.83975 6.04998 6.36216 6.57978 6.97575 7.24137 8.10370 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.045384 B = 0.009143 C = 0.007727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.807410 B = 3061.601433 C = 3622.606658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.343 6.343 3 C 0.159 3.841 4 C -0.248 4.248 5 C 0.013 3.987 6 C -0.240 4.240 7 C 0.042 3.958 8 N -0.334 5.334 9 N -0.238 5.238 10 C -0.400 4.400 11 H 0.085 0.915 12 C -0.004 4.004 13 N -0.873 5.873 14 Si 1.154 2.846 15 H -0.276 1.276 16 H -0.274 1.274 17 H -0.305 1.305 18 C 0.082 3.918 19 C -0.212 4.212 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.117 0.883 23 H 0.167 0.833 24 H 0.171 0.829 25 H 0.233 0.767 26 H 0.271 0.729 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.735 3.251 0.845 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.111 3.889 4 C -0.268 4.268 5 C -0.007 4.007 6 C -0.250 4.250 7 C -0.144 4.144 8 N -0.155 5.155 9 N -0.010 5.010 10 C -0.529 4.529 11 H 0.103 0.897 12 C -0.210 4.210 13 N -0.503 5.503 14 Si 0.980 3.020 15 H -0.202 1.202 16 H -0.200 1.200 17 H -0.235 1.235 18 C -0.040 4.040 19 C -0.236 4.236 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.135 0.865 23 H 0.184 0.816 24 H 0.189 0.811 25 H 0.249 0.751 26 H 0.082 0.918 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.097 4.333 1.142 15.748 hybrid contribution -1.346 -2.255 -0.538 2.680 sum -16.443 2.078 0.604 16.584 Atomic orbital electron populations 1.23386 0.75913 1.05474 1.02727 1.85999 1.24027 1.26953 1.88703 1.18579 0.90157 0.85360 0.94794 1.20952 1.01003 0.90776 1.14057 1.20471 0.90305 0.98750 0.91125 1.19963 0.95385 0.90987 1.18666 1.25415 0.87155 1.00353 1.01516 1.75605 1.24889 0.89742 1.25305 1.44488 1.03341 1.02051 1.51089 1.20683 0.85959 0.90775 1.55521 0.89696 1.27773 0.89654 1.10794 0.92800 1.70934 1.31310 1.09489 1.38587 0.82243 0.73250 0.69127 0.77335 1.20161 1.20033 1.23459 1.18740 0.84977 0.95899 1.04406 1.18838 0.92663 0.94462 1.17619 0.91189 0.91208 0.86506 0.81585 0.81128 0.75061 0.91844 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.80 113.37 1.11 1.45 15 2 O -0.34 -10.81 10.48 -91.99 -0.96 -11.77 15 3 C 0.16 5.73 6.69 22.57 0.15 5.88 15 4 C -0.25 -6.97 8.96 22.13 0.20 -6.77 15 5 C 0.01 0.39 10.05 22.26 0.22 0.62 15 6 C -0.24 -9.57 6.36 -20.20 -0.13 -9.69 15 7 C 0.04 1.64 12.29 86.92 1.07 2.71 15 8 N -0.33 -16.65 7.14 -52.88 -0.38 -17.03 15 9 N -0.24 -13.19 3.62 -184.01 -0.67 -13.86 15 10 C -0.40 -24.11 10.43 84.04 0.88 -23.24 15 11 H 0.09 5.33 8.05 -2.91 -0.02 5.30 15 12 C 0.00 -0.22 5.50 84.91 0.47 0.25 15 13 N -0.87 -52.66 13.69 21.65 0.30 -52.37 15 14 Si 1.15 57.69 26.21 68.60 1.80 59.49 15 15 H -0.28 -13.28 7.11 99.48 0.71 -12.58 15 16 H -0.27 -13.40 6.39 99.48 0.64 -12.76 15 17 H -0.30 -14.67 7.11 99.48 0.71 -13.96 15 18 C 0.08 4.03 6.81 39.03 0.27 4.30 15 19 C -0.21 -9.72 9.91 22.47 0.22 -9.50 15 20 H 0.07 1.04 7.64 -2.39 -0.02 1.02 15 21 H 0.07 1.04 7.64 -2.39 -0.02 1.02 15 22 H 0.12 1.54 8.14 -2.39 -0.02 1.52 15 23 H 0.17 3.11 6.24 -2.91 -0.02 3.09 15 24 H 0.17 3.18 8.06 -2.90 -0.02 3.16 15 25 H 0.23 6.11 8.06 -2.91 -0.02 6.09 15 26 H 0.27 16.08 8.73 -92.71 -0.81 15.27 15 27 H 0.09 4.57 8.05 -2.91 -0.02 4.55 15 Total: -1.00 -73.42 239.16 5.61 -67.81 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.07 Total: 1.72 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 4.46 Total: -33.99 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -0.75 Total: -83.25 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.96 Total: -11.77 kcal Atomic # 14 Polarization: 57.69 SS G_CDS: 1.80 Total: 59.49 kcal Total: -73.42 5.61 -67.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426888.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.772 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds