Wall clock time and date at job start Mon Mar 30 2020 02:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37990 * 119.77764 * 2 1 4 4 C 1.43205 * 120.26003 * 359.97438 * 3 2 1 5 5 N 3.47418 * 80.10143 * 359.97438 * 2 1 3 6 6 C 1.41582 * 119.48362 * 180.27437 * 3 2 1 7 7 C 1.36011 * 119.02122 * 359.44152 * 6 3 2 8 8 C 1.40721 * 119.50898 * 0.51583 * 7 6 3 9 9 O 1.21991 * 119.74241 * 179.75749 * 8 7 6 10 10 N 1.34538 * 120.50985 * 359.77372 * 8 7 6 11 11 C 1.46498 * 119.48733 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46962 * 269.98147 * 11 10 8 13 13 H 1.07995 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99556 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00150 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99742 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47294 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47096 * 120.00186 * 16 14 12 19 19 H 1.48495 * 109.47480 * 239.99973 * 16 14 12 20 20 H 1.09003 * 109.47282 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46955 * 119.99933 * 1 2 3 22 22 H 1.08996 * 109.47664 * 240.00121 * 1 2 3 23 23 H 1.08007 * 120.49285 * 179.70085 * 6 3 2 24 24 H 1.07998 * 120.24134 * 180.24627 * 7 6 3 25 25 H 1.09003 * 109.46862 * 29.97940 * 11 10 8 26 26 H 1.08996 * 109.47405 * 149.97779 * 11 10 8 27 27 H 0.96991 * 119.99464 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1977 0.0000 4 6 1.4771 2.4384 -0.0006 5 7 0.9098 3.4225 -0.0015 6 6 3.6081 1.1904 -0.0059 7 6 4.2618 -0.0022 0.0001 8 6 3.5211 -1.1987 0.0010 9 8 4.1031 -2.2708 0.0020 10 7 2.1760 -1.1693 0.0006 11 6 1.4273 -2.4285 0.0010 12 6 1.1706 -2.8607 -1.4197 13 1 1.5290 -2.2576 -2.2408 14 6 0.4782 -4.0262 -1.6713 15 7 0.0413 -4.7604 -0.6714 16 14 0.1594 -4.5617 -3.4322 17 1 0.7494 -3.5690 -4.3660 18 1 0.7804 -5.8903 -3.6658 19 1 -1.3044 -4.6518 -3.6650 20 1 -0.3634 1.0277 -0.0005 21 1 -0.3633 -0.5138 -0.8900 22 1 -0.3634 -0.5138 0.8899 23 1 4.1609 2.1183 -0.0109 24 1 5.3414 -0.0307 -0.0002 25 1 2.0065 -3.1955 0.5151 26 1 0.4766 -2.2858 0.5147 27 1 -0.4461 -5.5801 -0.8484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307441543.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:18 Heat of formation + Delta-G solvation = 17.448010 kcal Electronic energy + Delta-G solvation = -14050.998893 eV Core-core repulsion = 11581.317770 eV Total energy + Delta-G solvation = -2469.681123 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.02656 -37.24073 -35.98437 -34.52376 -32.70204 -31.36430 -27.95982 -27.54352 -24.07374 -22.95189 -21.51275 -18.83204 -17.17834 -16.97872 -15.99601 -15.22413 -15.04584 -14.20724 -13.64772 -13.50662 -13.32199 -13.19407 -12.93868 -12.53700 -12.46811 -11.94309 -11.66203 -11.39343 -11.20479 -10.85372 -10.79487 -10.42357 -10.21535 -9.36726 -9.24454 -8.71699 -7.48812 -6.34778 -4.42618 1.16517 1.66511 2.85386 3.16017 3.23790 3.25784 3.33829 3.43546 4.14990 4.25427 4.27608 4.66041 4.97418 5.01164 5.29153 5.43066 5.65026 5.72168 6.13778 6.19235 6.34380 6.43099 6.63172 6.89657 7.00912 7.58780 7.67024 7.76490 7.80956 8.52869 8.62841 9.24416 10.73872 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031266 B = 0.009412 C = 0.008122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.317270 B = 2974.164031 C = 3446.668902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 C -0.198 4.198 4 C 0.289 3.711 5 N -0.454 5.454 6 C 0.014 3.986 7 C -0.258 4.258 8 C 0.514 3.486 9 O -0.528 6.528 10 N -0.460 5.460 11 C 0.210 3.790 12 C -0.540 4.540 13 H 0.065 0.935 14 C 0.070 3.930 15 N -0.886 5.886 16 Si 0.905 3.095 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 H 0.077 0.923 21 H 0.111 0.889 22 H 0.095 0.905 23 H 0.134 0.866 24 H 0.148 0.852 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 8.361 1.587 8.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.145 3.855 3 C -0.208 4.208 4 C -0.024 4.024 5 N -0.132 5.132 6 C -0.009 4.009 7 C -0.281 4.281 8 C 0.315 3.685 9 O -0.408 6.408 10 N -0.163 5.163 11 C 0.093 3.907 12 C -0.578 4.578 13 H 0.083 0.917 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.732 3.268 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.206 1.206 20 H 0.096 0.904 21 H 0.129 0.871 22 H 0.114 0.886 23 H 0.151 0.849 24 H 0.166 0.834 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.228 8.865 1.640 9.098 hybrid contribution 0.104 -0.753 -0.944 1.212 sum 1.332 8.112 0.696 8.250 Atomic orbital electron populations 1.21286 0.87808 1.04016 1.06173 1.20827 0.95221 0.84978 0.84488 1.15025 0.92206 0.85696 1.27841 1.25040 0.92839 0.92301 0.92260 1.81224 1.08395 1.11004 1.12545 1.21057 0.91337 0.98623 0.89847 1.21900 1.01176 0.91071 1.13916 1.17198 0.80935 0.91240 0.79140 1.90938 1.67766 1.31878 1.50237 1.45993 1.08919 1.08735 1.52647 1.20155 0.92041 0.78425 1.00082 1.21182 1.37240 1.08675 0.90678 0.91718 1.24900 0.94864 0.95585 0.98126 1.69917 1.36677 1.14711 1.31032 0.86314 0.77968 0.78935 0.83571 1.19511 1.20544 1.20620 0.90379 0.87107 0.88623 0.84853 0.83431 0.91621 0.92600 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.57 36.00 0.31 -1.61 15 2 C 0.27 4.35 6.70 -81.42 -0.55 3.80 15 3 C -0.20 -2.85 5.74 -106.79 -0.61 -3.46 15 4 C 0.29 4.18 13.48 -22.47 -0.30 3.88 15 5 N -0.45 -7.19 18.54 41.83 0.78 -6.42 15 6 C 0.01 0.19 9.83 -39.11 -0.38 -0.20 15 7 C -0.26 -4.02 9.97 -39.44 -0.39 -4.42 15 8 C 0.51 10.49 7.39 -15.43 -0.11 10.37 15 9 O -0.53 -12.98 16.59 4.93 0.08 -12.90 15 10 N -0.46 -9.09 2.54 -115.97 -0.29 -9.38 15 11 C 0.21 4.86 4.60 -5.19 -0.02 4.84 15 12 C -0.54 -13.76 9.18 -34.44 -0.32 -14.08 15 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 15 14 C 0.07 1.80 5.46 -17.82 -0.10 1.71 15 15 N -0.89 -23.91 13.29 55.43 0.74 -23.18 15 16 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 15 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 20 H 0.08 0.98 6.40 -51.93 -0.33 0.65 15 21 H 0.11 1.69 7.89 -51.93 -0.41 1.28 15 22 H 0.10 1.26 7.35 -51.93 -0.38 0.88 15 23 H 0.13 1.31 8.06 -52.48 -0.42 0.89 15 24 H 0.15 1.99 8.06 -52.49 -0.42 1.57 15 25 H 0.07 1.73 7.36 -51.93 -0.38 1.34 15 26 H 0.06 1.23 6.35 -51.93 -0.33 0.90 15 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 LS Contribution 250.32 15.07 3.77 3.77 Total: -1.00 -29.37 250.32 -4.66 -34.03 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -2.23 Total: -1.98 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -2.48 Total: 0.82 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 1.22 Total: -38.98 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.37 -4.66 -34.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307441543.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.477 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds