Wall clock time and date at job start Mon Mar 30 2020 02:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37990 * 119.77764 * 2 1 4 4 C 1.43205 * 120.26003 * 359.97438 * 3 2 1 5 5 N 3.47418 * 80.10143 * 359.97438 * 2 1 3 6 6 C 1.41582 * 119.48362 * 180.27437 * 3 2 1 7 7 C 1.36011 * 119.02122 * 359.44152 * 6 3 2 8 8 C 1.40721 * 119.50898 * 0.51583 * 7 6 3 9 9 O 1.21991 * 119.74241 * 179.75749 * 8 7 6 10 10 N 1.34538 * 120.50985 * 359.77372 * 8 7 6 11 11 C 1.46498 * 119.48733 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46962 * 269.98147 * 11 10 8 13 13 H 1.07995 * 120.00098 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99556 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00150 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99742 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47294 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47096 * 120.00186 * 16 14 12 19 19 H 1.48495 * 109.47480 * 239.99973 * 16 14 12 20 20 H 1.09003 * 109.47282 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46955 * 119.99933 * 1 2 3 22 22 H 1.08996 * 109.47664 * 240.00121 * 1 2 3 23 23 H 1.08007 * 120.49285 * 179.70085 * 6 3 2 24 24 H 1.07998 * 120.24134 * 180.24627 * 7 6 3 25 25 H 1.09003 * 109.46862 * 29.97940 * 11 10 8 26 26 H 1.08996 * 109.47405 * 149.97779 * 11 10 8 27 27 H 0.96991 * 119.99464 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1977 0.0000 4 6 1.4771 2.4384 -0.0006 5 7 0.9098 3.4225 -0.0015 6 6 3.6081 1.1904 -0.0059 7 6 4.2618 -0.0022 0.0001 8 6 3.5211 -1.1987 0.0010 9 8 4.1031 -2.2708 0.0020 10 7 2.1760 -1.1693 0.0006 11 6 1.4273 -2.4285 0.0010 12 6 1.1706 -2.8607 -1.4197 13 1 1.5290 -2.2576 -2.2408 14 6 0.4782 -4.0262 -1.6713 15 7 0.0413 -4.7604 -0.6714 16 14 0.1594 -4.5617 -3.4322 17 1 0.7494 -3.5690 -4.3660 18 1 0.7804 -5.8903 -3.6658 19 1 -1.3044 -4.6518 -3.6650 20 1 -0.3634 1.0277 -0.0005 21 1 -0.3633 -0.5138 -0.8900 22 1 -0.3634 -0.5138 0.8899 23 1 4.1609 2.1183 -0.0109 24 1 5.3414 -0.0307 -0.0002 25 1 2.0065 -3.1955 0.5151 26 1 0.4766 -2.2858 0.5147 27 1 -0.4461 -5.5801 -0.8484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307441543.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:18 Heat of formation + Delta-G solvation = -0.450176 kcal Electronic energy + Delta-G solvation = -14051.775017 eV Core-core repulsion = 11581.317770 eV Total energy + Delta-G solvation = -2470.457246 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.48045 -38.68310 -37.40586 -36.01129 -34.50065 -32.73572 -29.77600 -28.78757 -25.82642 -24.39271 -22.94371 -20.21117 -18.91174 -18.54925 -17.51210 -16.78574 -16.70436 -15.79644 -14.89110 -14.85794 -14.65832 -14.51992 -14.41147 -14.04256 -13.93996 -13.42885 -13.13935 -12.99827 -12.75034 -12.54565 -12.34179 -12.25024 -11.76746 -10.94913 -10.85039 -10.70574 -8.90790 -8.32530 -6.47195 -0.12893 0.37509 1.38394 1.41629 1.50913 1.57897 1.89640 2.12958 2.35585 2.85283 2.97898 3.02724 3.40271 3.80667 3.95616 4.23262 4.52039 4.54698 4.81227 4.89269 5.03113 5.08553 5.12168 5.22011 5.46576 5.61997 5.82211 6.21006 6.56960 6.58914 7.05158 7.24057 8.75912 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031266 B = 0.009412 C = 0.008122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.317270 B = 2974.164031 C = 3446.668902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.251 3.749 3 C -0.173 4.173 4 C 0.307 3.693 5 N -0.464 5.464 6 C 0.042 3.958 7 C -0.262 4.262 8 C 0.495 3.505 9 O -0.592 6.592 10 N -0.470 5.470 11 C 0.226 3.774 12 C -0.549 4.549 13 H 0.056 0.944 14 C 0.023 3.977 15 N -0.917 5.917 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.267 1.267 20 H 0.097 0.903 21 H 0.098 0.902 22 H 0.102 0.898 23 H 0.183 0.817 24 H 0.170 0.830 25 H 0.024 0.976 26 H 0.065 0.935 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 10.704 0.969 10.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.130 3.870 3 C -0.182 4.182 4 C -0.006 4.006 5 N -0.142 5.142 6 C 0.020 3.980 7 C -0.284 4.284 8 C 0.300 3.700 9 O -0.477 6.477 10 N -0.173 5.173 11 C 0.106 3.894 12 C -0.587 4.587 13 H 0.075 0.925 14 C -0.178 4.178 15 N -0.555 5.555 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.192 1.192 20 H 0.116 0.884 21 H 0.116 0.884 22 H 0.120 0.880 23 H 0.200 0.800 24 H 0.188 0.812 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.134 11.278 1.025 11.381 hybrid contribution 0.112 -1.335 -0.708 1.515 sum 1.247 9.943 0.317 10.026 Atomic orbital electron populations 1.21299 0.86533 1.05136 1.05882 1.21169 0.96211 0.84381 0.85260 1.15116 0.92908 0.84904 1.25290 1.24726 0.92333 0.91750 0.91811 1.81280 1.08742 1.11566 1.12609 1.21484 0.90608 0.99569 0.86361 1.21947 1.01979 0.89695 1.14751 1.18041 0.81088 0.92201 0.78715 1.90897 1.68759 1.34086 1.53941 1.45759 1.08891 1.08736 1.53927 1.19665 0.91781 0.79331 0.98579 1.21387 1.36899 1.08845 0.91549 0.92544 1.25681 0.94712 0.95628 1.01775 1.70004 1.37449 1.15187 1.32864 0.85385 0.78399 0.78079 0.79119 1.19292 1.20862 1.19185 0.88425 0.88380 0.87954 0.79956 0.81237 0.95826 0.91748 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 8.57 71.24 0.61 -2.93 15 2 C 0.25 7.77 6.70 42.06 0.28 8.05 15 3 C -0.17 -4.41 5.74 -21.27 -0.12 -4.53 15 4 C 0.31 7.70 13.48 88.33 1.19 8.89 15 5 N -0.46 -13.03 18.54 19.00 0.35 -12.67 15 6 C 0.04 0.93 9.83 22.58 0.22 1.15 15 7 C -0.26 -7.61 9.97 22.36 0.22 -7.39 15 8 C 0.50 20.45 7.39 84.89 0.63 21.08 15 9 O -0.59 -30.46 16.59 -5.29 -0.09 -30.55 15 10 N -0.47 -18.75 2.54 -639.04 -1.62 -20.38 15 11 C 0.23 10.83 4.60 85.63 0.39 11.23 15 12 C -0.55 -28.67 9.18 25.60 0.24 -28.43 15 13 H 0.06 2.97 7.81 -2.91 -0.02 2.95 15 14 C 0.02 1.22 5.46 84.66 0.46 1.69 15 15 N -0.92 -50.50 13.29 21.45 0.28 -50.21 15 16 Si 0.97 41.71 29.54 68.60 2.03 43.73 15 17 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 15 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 20 H 0.10 2.21 6.40 -2.39 -0.02 2.19 15 21 H 0.10 2.94 7.89 -2.39 -0.02 2.92 15 22 H 0.10 2.61 7.35 -2.39 -0.02 2.59 15 23 H 0.18 2.39 8.06 -2.91 -0.02 2.37 15 24 H 0.17 4.15 8.06 -2.91 -0.02 4.12 15 25 H 0.02 1.33 7.36 -2.39 -0.02 1.31 15 26 H 0.06 2.92 6.35 -2.39 -0.02 2.91 15 27 H 0.27 14.05 8.31 -92.71 -0.77 13.28 15 Total: -1.00 -65.36 250.32 6.27 -59.08 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: 1.20 Total: 2.20 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 4.12 Total: 8.80 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -0.98 Total: -83.26 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.09 Total: -30.55 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -65.36 6.27 -59.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307441543.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.630 kcal (2) G-P(sol) polarization free energy of solvation -65.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds