Wall clock time and date at job start Mon Mar 30 2020 02:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.01473 * 54.30192 * 11 10 9 13 13 C 1.53872 * 110.02985 * 292.91819 * 11 10 9 14 14 C 1.54201 * 108.68941 * 193.57679 * 13 11 10 15 15 S 1.82909 * 105.10935 * 27.83377 * 14 13 11 16 16 O 1.42106 * 109.35525 * 244.51411 * 15 14 13 17 17 O 1.42100 * 109.35266 * 111.31889 * 15 14 13 18 18 C 1.55049 * 110.02605 * 175.67536 * 11 10 9 19 19 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 21 21 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 22 22 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 23 23 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 24 24 H 1.08997 * 109.64737 * 313.37770 * 13 11 10 25 25 H 1.09002 * 109.64869 * 73.67942 * 13 11 10 26 26 H 1.09004 * 110.26668 * 268.94224 * 14 13 11 27 27 H 1.08998 * 110.42369 * 146.80685 * 14 13 11 28 28 H 1.09000 * 110.79616 * 279.99606 * 18 11 10 29 29 H 1.09000 * 110.79280 * 43.26892 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6363 0.0009 12 1 5.9246 -2.0388 0.8327 13 6 6.0785 -2.0732 -1.3306 14 6 7.5818 -2.3976 -1.4438 15 16 7.8152 -3.9246 -0.4644 16 8 8.6560 -3.6473 0.6472 17 8 8.1256 -5.0015 -1.3379 18 6 6.0826 -4.0889 0.1107 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6803 -0.8889 21 1 3.8746 -0.6798 0.8911 22 1 3.6580 -3.1504 0.8908 23 1 3.6586 -3.1501 -0.8892 24 1 5.5417 -2.5323 -2.1607 25 1 5.9330 -0.9933 -1.3550 26 1 8.1759 -1.5850 -1.0256 27 1 7.8564 -2.5697 -2.4845 28 1 6.0490 -4.4363 1.1433 29 1 5.5180 -4.7574 -0.5393 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694319850.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:31 Heat of formation + Delta-G solvation = -91.791184 kcal Electronic energy + Delta-G solvation = -12975.262309 eV Core-core repulsion = 10603.995419 eV Total energy + Delta-G solvation = -2371.266889 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.45643 -37.01456 -36.00395 -33.27653 -31.35355 -29.66040 -26.05138 -23.81240 -21.36107 -19.90565 -18.80703 -16.92952 -16.72548 -16.22703 -15.66218 -14.54988 -14.38600 -14.24352 -13.61342 -13.11334 -12.80009 -12.27406 -12.16816 -12.06308 -11.92089 -11.86165 -11.30930 -11.04461 -10.76155 -10.68622 -10.52325 -9.93614 -9.84150 -9.52417 -9.25121 -8.60315 -6.10723 -4.09460 0.05748 2.51726 3.24338 3.33017 3.34590 3.57632 3.97227 4.38416 4.43444 4.66048 4.71759 4.79930 5.04597 5.23184 5.39003 5.54279 5.64955 5.90246 5.94740 6.06693 6.34114 6.48602 6.75075 7.18104 7.31253 7.71852 8.46354 8.94068 9.51385 11.02753 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.061657 B = 0.006661 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.014117 B = 4202.769283 C = 4396.095001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.089 4.089 11 C -0.092 4.092 12 H 0.091 0.909 13 C -0.112 4.112 14 C -0.590 4.590 15 S 2.380 3.620 16 O -0.946 6.946 17 O -0.949 6.949 18 C -0.577 4.577 19 H 0.263 0.737 20 H 0.014 0.986 21 H 0.017 0.983 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.925 -4.574 -2.039 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.055 4.055 10 C -0.127 4.127 11 C -0.112 4.112 12 H 0.110 0.890 13 C -0.151 4.151 14 C -0.720 4.720 15 S 2.566 3.434 16 O -0.943 6.943 17 O -0.946 6.946 18 C -0.708 4.708 19 H 0.073 0.927 20 H 0.033 0.967 21 H 0.035 0.965 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.151 0.849 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.615 -5.031 -1.879 15.570 hybrid contribution -0.376 1.448 -0.172 1.506 sum 14.238 -3.583 -2.051 14.825 Atomic orbital electron populations 1.69911 1.06337 1.26949 1.50964 1.25041 0.94724 0.99193 0.94540 0.86791 0.80396 0.83680 0.78486 1.20291 1.21369 1.18979 1.21130 0.89481 0.94486 1.51006 0.91025 1.19659 0.97305 0.92120 0.96458 1.21454 0.88865 1.00370 1.02051 1.22054 1.00843 0.90473 0.97806 0.89050 1.22074 0.89516 1.04833 0.98627 1.30480 1.05964 1.20706 1.14877 1.09226 0.79205 0.78090 0.76916 1.93600 1.64148 1.85370 1.51149 1.93585 1.83480 1.51405 1.66174 1.30681 1.21899 1.05632 1.12559 0.92685 0.96743 0.96472 0.91836 0.92024 0.89488 0.88575 0.84882 0.84774 0.84624 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.49 15 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 15 3 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.27 -5.99 6.54 56.52 0.37 -5.62 15 7 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 15 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 15 9 C -0.02 -0.39 3.86 -27.88 -0.11 -0.50 15 10 C -0.09 -1.52 4.64 -26.73 -0.12 -1.65 15 11 C -0.09 -1.19 2.60 -89.08 -0.23 -1.42 15 12 H 0.09 1.14 8.14 -51.93 -0.42 0.71 15 13 C -0.11 -1.29 5.20 -25.65 -0.13 -1.42 15 14 C -0.59 -5.46 7.26 37.79 0.27 -5.19 15 15 S 2.38 26.23 6.11 -107.50 -0.66 25.58 15 16 O -0.95 -13.57 18.15 -57.71 -1.05 -14.62 15 17 O -0.95 -13.41 18.15 -57.71 -1.05 -14.46 15 18 C -0.58 -6.08 6.67 38.24 0.26 -5.83 15 19 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 20 H 0.01 0.30 6.45 -51.93 -0.33 -0.03 15 21 H 0.02 0.37 7.20 -51.93 -0.37 0.00 15 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.06 1.03 8.08 -51.93 -0.42 0.61 15 24 H 0.09 0.94 8.05 -51.93 -0.42 0.52 15 25 H 0.10 1.15 7.40 -51.93 -0.38 0.77 15 26 H 0.13 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.13 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.14 1.27 8.14 -51.93 -0.42 0.84 15 29 H 0.14 1.30 8.10 -51.93 -0.42 0.88 15 LS Contribution 252.24 15.07 3.80 3.80 Total: -1.00 -34.47 252.24 -7.39 -41.86 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -4.05 Total: -3.10 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -0.50 Total: -28.83 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.49 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -2.09 Total: -29.08 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 16 Polarization: 26.23 SS G_CDS: -0.66 Total: 25.58 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -34.47 -7.39 -41.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694319850.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.932 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds