Wall clock time and date at job start Mon Mar 30 2020 02:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48499 * 109.47145 * 269.99301 * 3 2 1 5 5 H 1.48496 * 109.47547 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99701 * 3 2 1 7 7 C 1.37870 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00310 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.01473 * 54.30192 * 11 10 9 13 13 C 1.53872 * 110.02985 * 292.91819 * 11 10 9 14 14 C 1.54201 * 108.68941 * 193.57679 * 13 11 10 15 15 S 1.82909 * 105.10935 * 27.83377 * 14 13 11 16 16 O 1.42106 * 109.35525 * 244.51411 * 15 14 13 17 17 O 1.42100 * 109.35266 * 111.31889 * 15 14 13 18 18 C 1.55049 * 110.02605 * 175.67536 * 11 10 9 19 19 H 0.96999 * 120.00061 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 21 21 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 22 22 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 23 23 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 24 24 H 1.08997 * 109.64737 * 313.37770 * 13 11 10 25 25 H 1.09002 * 109.64869 * 73.67942 * 13 11 10 26 26 H 1.09004 * 110.26668 * 268.94224 * 14 13 11 27 27 H 1.08998 * 110.42369 * 146.80685 * 14 13 11 28 28 H 1.09000 * 110.79616 * 279.99606 * 18 11 10 29 29 H 1.09000 * 110.79280 * 43.26892 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0010 11 6 5.5516 -2.6363 0.0009 12 1 5.9246 -2.0388 0.8327 13 6 6.0785 -2.0732 -1.3306 14 6 7.5818 -2.3976 -1.4438 15 16 7.8152 -3.9246 -0.4644 16 8 8.6560 -3.6473 0.6472 17 8 8.1256 -5.0015 -1.3379 18 6 6.0826 -4.0889 0.1107 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6803 -0.8889 21 1 3.8746 -0.6798 0.8911 22 1 3.6580 -3.1504 0.8908 23 1 3.6586 -3.1501 -0.8892 24 1 5.5417 -2.5323 -2.1607 25 1 5.9330 -0.9933 -1.3550 26 1 8.1759 -1.5850 -1.0256 27 1 7.8564 -2.5697 -2.4845 28 1 6.0490 -4.4363 1.1433 29 1 5.5180 -4.7574 -0.5393 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694319850.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:31 Heat of formation + Delta-G solvation = -117.546767 kcal Electronic energy + Delta-G solvation = -12976.379155 eV Core-core repulsion = 10603.995419 eV Total energy + Delta-G solvation = -2372.383735 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.53459 -38.01111 -37.00082 -35.14896 -32.90310 -30.78276 -27.56569 -24.91444 -22.91685 -21.10996 -19.71617 -18.88105 -17.68832 -17.23641 -16.63245 -16.29517 -15.54102 -15.25267 -14.74393 -14.69776 -14.36320 -13.59042 -13.22498 -13.16493 -13.08907 -12.98985 -12.64265 -12.48218 -12.06725 -11.77082 -11.75904 -11.60484 -11.30375 -11.13192 -10.87712 -10.70813 -8.26359 -6.30276 -0.80964 1.38423 1.41263 1.52249 1.67720 2.38942 2.71127 3.10009 3.12180 3.53616 3.74205 3.81650 4.07619 4.11505 4.49935 4.58656 4.77730 4.82002 4.91152 4.97249 5.11138 5.23744 5.25693 5.58983 5.67081 5.71643 6.32315 6.79531 7.34628 8.90690 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.061657 B = 0.006661 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.014117 B = 4202.769283 C = 4396.095001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.240 1.240 7 C -0.532 4.532 8 H 0.029 0.971 9 C -0.019 4.019 10 C -0.085 4.085 11 C -0.092 4.092 12 H 0.100 0.900 13 C -0.119 4.119 14 C -0.568 4.568 15 S 2.398 3.602 16 O -0.980 6.980 17 O -0.982 6.982 18 C -0.572 4.572 19 H 0.264 0.736 20 H 0.031 0.969 21 H 0.021 0.979 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.152 0.848 27 H 0.157 0.843 28 H 0.147 0.853 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.123 -3.552 -2.568 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.197 4.197 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.163 1.163 7 C -0.570 4.570 8 H 0.048 0.952 9 C -0.056 4.056 10 C -0.124 4.124 11 C -0.112 4.112 12 H 0.118 0.882 13 C -0.157 4.157 14 C -0.700 4.700 15 S 2.587 3.413 16 O -0.977 6.977 17 O -0.979 6.979 18 C -0.703 4.703 19 H 0.073 0.927 20 H 0.049 0.951 21 H 0.039 0.961 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.170 0.830 27 H 0.175 0.825 28 H 0.165 0.835 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 16.847 -4.050 -2.397 17.492 hybrid contribution -1.164 1.064 -0.015 1.577 sum 15.683 -2.986 -2.413 16.146 Atomic orbital electron populations 1.70087 1.08530 1.28066 1.53063 1.26079 0.95572 1.03748 0.94286 0.85652 0.79687 0.77991 0.79296 1.18926 1.21715 1.16303 1.21588 0.92660 0.92882 1.49910 0.95249 1.19655 0.93394 0.95406 0.97145 1.21314 0.92116 0.97304 1.01660 1.21968 0.97566 0.92326 0.99355 0.88215 1.22122 0.90922 1.04870 0.97835 1.30338 1.04681 1.19183 1.15813 1.08565 0.78564 0.78131 0.76053 1.93553 1.65475 1.85936 1.52758 1.93543 1.84079 1.53564 1.66724 1.30642 1.21378 1.04517 1.13774 0.92687 0.95099 0.96053 0.92785 0.92146 0.88808 0.88460 0.82977 0.82474 0.83488 0.83288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.27 13.96 21.44 0.30 -58.97 15 2 C 0.00 -0.04 5.47 84.65 0.46 0.42 15 3 Si 0.95 42.28 27.47 68.60 1.88 44.16 15 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 15 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 15 6 H -0.24 -9.61 6.54 99.48 0.65 -8.96 15 7 C -0.53 -29.39 9.66 25.60 0.25 -29.15 15 8 H 0.03 1.80 7.99 -2.91 -0.02 1.78 15 9 C -0.02 -0.78 3.86 29.85 0.12 -0.66 15 10 C -0.09 -2.81 4.64 30.59 0.14 -2.66 15 11 C -0.09 -2.14 2.60 -9.80 -0.03 -2.16 15 12 H 0.10 2.16 8.14 -2.39 -0.02 2.14 15 13 C -0.12 -2.29 5.20 31.30 0.16 -2.13 15 14 C -0.57 -8.24 7.26 72.39 0.53 -7.72 15 15 S 2.40 47.29 6.11 -56.49 -0.34 46.95 15 16 O -0.98 -26.33 18.15 -127.49 -2.31 -28.64 15 17 O -0.98 -26.02 18.15 -127.49 -2.31 -28.34 15 18 C -0.57 -10.71 6.67 72.68 0.49 -10.23 15 19 H 0.26 15.32 8.31 -92.71 -0.77 14.55 15 20 H 0.03 1.20 6.45 -2.39 -0.02 1.18 15 21 H 0.02 0.88 7.20 -2.39 -0.02 0.86 15 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.06 1.97 8.08 -2.38 -0.02 1.95 15 24 H 0.09 1.70 8.05 -2.39 -0.02 1.68 15 25 H 0.10 1.91 7.40 -2.39 -0.02 1.90 15 26 H 0.15 1.75 8.14 -2.39 -0.02 1.73 15 27 H 0.16 1.67 8.14 -2.39 -0.02 1.66 15 28 H 0.15 2.43 8.14 -2.39 -0.02 2.41 15 29 H 0.15 2.48 8.10 -2.39 -0.02 2.46 15 Total: -1.00 -75.13 252.24 0.39 -74.74 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.07 Total: 4.39 kcal Atomic # 6 Polarization: -56.41 SS G_CDS: 2.12 Total: -54.29 kcal Atomic # 7 Polarization: -59.27 SS G_CDS: 0.30 Total: -58.97 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -4.63 Total: -56.98 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.88 Total: 44.16 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.34 Total: 46.95 kcal Total: -75.13 0.39 -74.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694319850.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.811 kcal (2) G-P(sol) polarization free energy of solvation -75.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds