Wall clock time and date at job start Mon Mar 30 2020 02:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47469 * 2 1 4 4 C 1.50702 * 109.47370 * 239.99296 * 2 1 3 5 5 H 1.08002 * 119.99792 * 240.00303 * 4 2 1 6 6 C 1.37878 * 119.99794 * 60.00066 * 4 2 1 7 7 N 1.31513 * 120.00117 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99997 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46966 * 60.00187 * 8 6 4 10 10 H 1.48493 * 109.46984 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46950 * 300.00253 * 8 6 4 12 12 S 1.81405 * 109.47093 * 119.99354 * 2 1 3 13 13 O 1.42105 * 109.46832 * 61.38506 * 12 2 1 14 14 C 1.81397 * 102.99983 * 305.00285 * 12 2 1 15 15 H 1.08999 * 111.02579 * 67.76665 * 14 12 2 16 16 C 1.55457 * 111.14665 * 191.91850 * 14 12 2 17 17 C 1.54382 * 102.18540 * 151.99105 * 16 14 12 18 18 O 1.43233 * 107.66464 * 338.74226 * 17 16 14 19 19 C 1.43650 * 109.97542 * 358.24175 * 18 17 16 20 20 H 1.09001 * 109.46842 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47080 * 300.00627 * 1 2 3 22 22 H 1.08998 * 109.46767 * 60.00756 * 1 2 3 23 23 H 0.96999 * 120.00284 * 179.97438 * 7 6 4 24 24 H 1.08994 * 110.83103 * 33.84170 * 16 14 12 25 25 H 1.08999 * 110.92148 * 270.18048 * 16 14 12 26 26 H 1.09002 * 109.83024 * 219.18066 * 17 16 14 27 27 H 1.08996 * 109.83002 * 98.29659 * 17 16 14 28 28 H 1.08996 * 110.30866 * 143.34644 * 19 18 17 29 29 H 1.08998 * 110.30791 * 265.41708 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8299 -2.6035 8 14 2.3215 -1.1207 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8261 -0.4211 -5.2203 11 1 3.8065 -1.1214 -4.0079 12 16 2.1347 -0.8550 1.4813 13 8 1.6876 -2.2038 1.4653 14 6 1.3148 0.0377 2.8309 15 1 0.2389 -0.1364 2.8180 16 6 1.9259 -0.3441 4.2084 17 6 1.6760 0.9319 5.0407 18 8 1.4874 2.0176 4.1257 19 6 1.6362 1.5524 2.7748 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 0.7096 1.1615 -3.4845 24 1 2.9933 -0.5446 4.1167 25 1 1.4055 -1.1982 4.6418 26 1 2.5367 1.1315 5.6791 27 1 0.7832 0.8050 5.6529 28 1 0.9324 2.0645 2.1186 29 1 2.6580 1.7114 2.4303 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703065208.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:38 Heat of formation + Delta-G solvation = -90.842295 kcal Electronic energy + Delta-G solvation = -13266.106286 eV Core-core repulsion = 10894.880543 eV Total energy + Delta-G solvation = -2371.225742 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.88579 -34.73017 -34.05917 -31.92516 -30.52876 -28.86697 -25.37201 -22.45670 -21.68882 -21.26620 -17.11064 -16.59826 -16.32851 -15.72652 -14.97319 -14.62642 -13.93258 -13.40746 -13.35075 -12.96024 -12.76883 -11.90361 -11.53812 -11.34802 -11.31297 -10.99478 -10.97297 -10.81312 -10.69983 -10.34630 -10.27479 -9.35508 -9.27278 -8.89747 -8.49660 -7.26832 -6.14801 -4.27531 2.40515 3.25676 3.29826 3.34352 3.64028 4.11782 4.31253 4.53210 4.78614 5.05927 5.14083 5.26679 5.40076 5.50004 5.79317 5.84389 5.96670 6.10396 6.25736 6.52950 6.68209 6.72735 7.13144 7.29588 7.62124 7.73894 8.08304 8.73311 9.38234 10.89595 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.053777 B = 0.008580 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.540919 B = 3262.570229 C = 3541.270973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.223 4.223 3 H 0.081 0.919 4 C -0.511 4.511 5 H 0.063 0.937 6 C 0.073 3.927 7 N -0.882 5.882 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.272 1.272 12 S 1.209 4.791 13 O -0.859 6.859 14 C -0.459 4.459 15 H 0.096 0.904 16 C -0.123 4.123 17 C 0.057 3.943 18 O -0.388 6.388 19 C 0.086 3.914 20 H 0.031 0.969 21 H 0.013 0.987 22 H 0.092 0.908 23 H 0.264 0.736 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.296 2.176 10.046 11.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.345 4.345 3 H 0.099 0.901 4 C -0.550 4.550 5 H 0.081 0.919 6 C -0.131 4.131 7 N -0.519 5.519 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.197 1.197 12 S 1.410 4.590 13 O -0.854 6.854 14 C -0.573 4.573 15 H 0.114 0.886 16 C -0.161 4.161 17 C -0.021 4.021 18 O -0.307 6.307 19 C 0.009 3.991 20 H 0.050 0.950 21 H 0.032 0.968 22 H 0.111 0.889 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.773 1.713 10.099 11.301 hybrid contribution -2.140 -0.781 -1.166 2.559 sum 2.633 0.933 8.933 9.359 Atomic orbital electron populations 1.21853 0.96938 0.99939 1.01357 1.24713 0.99191 1.04666 1.05923 0.90086 1.20444 1.32813 1.12577 0.89196 0.91925 1.24911 0.94502 0.94745 0.98976 1.69856 1.35658 1.22502 1.23910 0.86547 0.79476 0.79858 0.81611 1.20093 1.21070 1.19671 1.69712 1.15885 0.85481 0.87935 1.93012 1.81509 1.26022 1.84867 1.29534 1.09893 1.05870 1.11997 0.88574 1.22779 1.01694 0.98433 0.93205 1.23047 1.00489 0.86100 0.92446 1.88345 1.93130 1.33271 1.15988 1.23043 1.01779 0.90422 0.83871 0.94977 0.96823 0.88902 0.92597 0.89755 0.90285 0.91486 0.91962 0.89155 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.76 37.16 0.33 -3.12 15 2 C -0.22 -5.20 2.44 -27.88 -0.07 -5.27 15 3 H 0.08 1.82 7.97 -51.93 -0.41 1.41 15 4 C -0.51 -13.64 8.57 -34.44 -0.30 -13.93 15 5 H 0.06 1.67 7.71 -52.49 -0.40 1.27 15 6 C 0.07 1.96 5.30 -17.82 -0.09 1.87 15 7 N -0.88 -24.27 11.32 55.43 0.63 -23.65 15 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 15 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.27 -6.09 7.11 56.52 0.40 -5.68 15 12 S 1.21 23.17 12.14 -107.50 -1.30 21.87 15 13 O -0.86 -21.52 18.12 -35.23 -0.64 -22.16 15 14 C -0.46 -7.45 2.81 -24.40 -0.07 -7.52 15 15 H 0.10 1.73 7.42 -51.93 -0.39 1.35 15 16 C -0.12 -1.62 6.53 -24.70 -0.16 -1.78 15 17 C 0.06 0.71 7.79 37.88 0.30 1.00 15 18 O -0.39 -5.96 11.36 -35.23 -0.40 -6.36 15 19 C 0.09 1.29 6.70 38.18 0.26 1.54 15 20 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.01 0.28 6.61 -51.93 -0.34 -0.07 15 22 H 0.09 2.45 6.07 -51.93 -0.32 2.14 15 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 24 H 0.08 0.92 8.03 -51.93 -0.42 0.51 15 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 15 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 28 H 0.09 1.41 8.01 -51.93 -0.42 0.99 15 29 H 0.07 0.95 8.02 -51.93 -0.42 0.53 15 LS Contribution 253.41 15.07 3.82 3.82 Total: -1.00 -32.82 253.41 -6.67 -39.49 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -3.94 Total: -1.64 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 0.19 Total: -27.21 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.63 Total: -23.65 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.04 Total: -28.52 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 23.17 SS G_CDS: -1.30 Total: 21.87 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.82 -6.67 -39.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703065208.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.357 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds