Wall clock time and date at job start Mon Mar 30 2020 02:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47469 * 2 1 4 4 C 1.50702 * 109.47370 * 239.99296 * 2 1 3 5 5 H 1.08002 * 119.99792 * 240.00303 * 4 2 1 6 6 C 1.37878 * 119.99794 * 60.00066 * 4 2 1 7 7 N 1.31513 * 120.00117 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99997 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46966 * 60.00187 * 8 6 4 10 10 H 1.48493 * 109.46984 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46950 * 300.00253 * 8 6 4 12 12 S 1.81405 * 109.47093 * 119.99354 * 2 1 3 13 13 O 1.42105 * 109.46832 * 61.38506 * 12 2 1 14 14 C 1.81397 * 102.99983 * 305.00285 * 12 2 1 15 15 H 1.08999 * 111.02579 * 67.76665 * 14 12 2 16 16 C 1.55457 * 111.14665 * 191.91850 * 14 12 2 17 17 C 1.54382 * 102.18540 * 151.99105 * 16 14 12 18 18 O 1.43233 * 107.66464 * 338.74226 * 17 16 14 19 19 C 1.43650 * 109.97542 * 358.24175 * 18 17 16 20 20 H 1.09001 * 109.46842 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47080 * 300.00627 * 1 2 3 22 22 H 1.08998 * 109.46767 * 60.00756 * 1 2 3 23 23 H 0.96999 * 120.00284 * 179.97438 * 7 6 4 24 24 H 1.08994 * 110.83103 * 33.84170 * 16 14 12 25 25 H 1.08999 * 110.92148 * 270.18048 * 16 14 12 26 26 H 1.09002 * 109.83024 * 219.18066 * 17 16 14 27 27 H 1.08996 * 109.83002 * 98.29659 * 17 16 14 28 28 H 1.08996 * 110.30866 * 143.34644 * 19 18 17 29 29 H 1.08998 * 110.30791 * 265.41708 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8299 -2.6035 8 14 2.3215 -1.1207 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8261 -0.4211 -5.2203 11 1 3.8065 -1.1214 -4.0079 12 16 2.1347 -0.8550 1.4813 13 8 1.6876 -2.2038 1.4653 14 6 1.3148 0.0377 2.8309 15 1 0.2389 -0.1364 2.8180 16 6 1.9259 -0.3441 4.2084 17 6 1.6760 0.9319 5.0407 18 8 1.4874 2.0176 4.1257 19 6 1.6362 1.5524 2.7748 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 0.7096 1.1615 -3.4845 24 1 2.9933 -0.5446 4.1167 25 1 1.4055 -1.1982 4.6418 26 1 2.5367 1.1315 5.6791 27 1 0.7832 0.8050 5.6529 28 1 0.9324 2.0645 2.1186 29 1 2.6580 1.7114 2.4303 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703065208.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:38 Heat of formation + Delta-G solvation = -114.976554 kcal Electronic energy + Delta-G solvation = -13267.152826 eV Core-core repulsion = 10894.880543 eV Total energy + Delta-G solvation = -2372.272282 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.02242 -36.57960 -36.01784 -33.16571 -32.40916 -30.04243 -27.38967 -23.73444 -23.29571 -22.63582 -18.72491 -18.17932 -17.84557 -17.10093 -16.81556 -15.85475 -15.62101 -14.94142 -14.79018 -14.40649 -14.26397 -13.74395 -13.33566 -12.92154 -12.89740 -12.79256 -12.49132 -12.35464 -12.26271 -11.99589 -11.89286 -11.24060 -10.70593 -10.42923 -10.40902 -8.99155 -8.16970 -6.36059 0.84891 1.40565 1.42663 1.49993 2.01435 2.38737 2.91663 3.08687 3.14608 3.52218 3.92409 4.11753 4.32635 4.33260 4.56583 4.68404 4.74898 4.80097 4.87263 4.94337 4.97157 5.14284 5.33835 5.59816 5.70199 6.05221 6.10145 6.71521 7.32201 8.85732 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.053777 B = 0.008580 C = 0.007905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.540919 B = 3262.570229 C = 3541.270973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.244 4.244 3 H 0.090 0.910 4 C -0.532 4.532 5 H 0.055 0.945 6 C 0.027 3.973 7 N -0.905 5.905 8 Si 0.951 3.049 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.255 1.255 12 S 1.278 4.722 13 O -0.920 6.920 14 C -0.455 4.455 15 H 0.077 0.923 16 C -0.123 4.123 17 C 0.054 3.946 18 O -0.403 6.403 19 C 0.085 3.915 20 H 0.004 0.996 21 H 0.039 0.961 22 H 0.068 0.932 23 H 0.265 0.735 24 H 0.112 0.888 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 2.624 11.302 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.364 4.364 3 H 0.108 0.892 4 C -0.571 4.571 5 H 0.073 0.927 6 C -0.175 4.175 7 N -0.543 5.543 8 Si 0.776 3.224 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.179 1.179 12 S 1.480 4.520 13 O -0.915 6.915 14 C -0.572 4.572 15 H 0.096 0.904 16 C -0.162 4.162 17 C -0.023 4.023 18 O -0.323 6.323 19 C 0.008 3.992 20 H 0.023 0.977 21 H 0.058 0.942 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.130 0.870 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.048 2.152 11.322 13.015 hybrid contribution -2.579 -0.877 -1.402 3.064 sum 3.470 1.275 9.920 10.586 Atomic orbital electron populations 1.21730 0.98052 0.98007 1.01476 1.24865 0.98233 1.05597 1.07736 0.89236 1.20788 1.32845 1.12548 0.90924 0.92718 1.25641 0.94774 0.95453 1.01645 1.69953 1.36433 1.23524 1.24416 0.85713 0.79893 0.78143 0.78645 1.21024 1.20448 1.17928 1.68886 1.14410 0.82791 0.85870 1.92898 1.82921 1.30017 1.85697 1.29362 1.08697 1.06850 1.12283 0.90424 1.22934 1.03249 0.99144 0.90854 1.23249 1.02287 0.84708 0.92054 1.88332 1.93486 1.34375 1.16101 1.23114 1.03166 0.88727 0.84170 0.97721 0.94168 0.91323 0.92586 0.86956 0.89980 0.88365 0.91344 0.90149 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.60 8.76 71.98 0.63 -5.96 15 2 C -0.24 -11.37 2.44 29.85 0.07 -11.30 15 3 H 0.09 3.98 7.97 -2.39 -0.02 3.96 15 4 C -0.53 -28.61 8.57 25.60 0.22 -28.39 15 5 H 0.05 2.95 7.71 -2.91 -0.02 2.93 15 6 C 0.03 1.43 5.30 84.65 0.45 1.88 15 7 N -0.91 -50.29 11.32 21.45 0.24 -50.05 15 8 Si 0.95 42.76 29.54 68.60 2.03 44.79 15 9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 15 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 15 12 S 1.28 47.65 12.14 -56.49 -0.69 46.96 15 13 O -0.92 -46.03 18.12 -148.98 -2.70 -48.73 15 14 C -0.45 -13.86 2.81 32.11 0.09 -13.77 15 15 H 0.08 2.70 7.42 -2.39 -0.02 2.68 15 16 C -0.12 -2.84 6.53 31.91 0.21 -2.63 15 17 C 0.05 1.15 7.79 72.45 0.56 1.71 15 18 O -0.40 -11.15 11.36 -148.98 -1.69 -12.84 15 19 C 0.09 2.34 6.70 72.65 0.49 2.83 15 20 H 0.00 0.19 8.14 -2.39 -0.02 0.17 15 21 H 0.04 1.69 6.61 -2.39 -0.02 1.68 15 22 H 0.07 3.70 6.07 -2.39 -0.01 3.69 15 23 H 0.26 14.02 8.31 -92.71 -0.77 13.25 15 24 H 0.11 1.97 8.03 -2.39 -0.02 1.95 15 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 15 26 H 0.10 1.53 8.14 -2.39 -0.02 1.51 15 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 15 28 H 0.08 2.37 8.01 -2.39 -0.02 2.35 15 29 H 0.10 2.26 8.02 -2.39 -0.02 2.24 15 Total: -1.00 -70.78 253.41 1.04 -69.75 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.13 Total: 5.76 kcal Atomic # 6 Polarization: -58.36 SS G_CDS: 2.72 Total: -55.64 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.24 Total: -50.05 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -4.39 Total: -61.57 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 47.65 SS G_CDS: -0.69 Total: 46.96 kcal Total: -70.78 1.04 -69.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703065208.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.231 kcal (2) G-P(sol) polarization free energy of solvation -70.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds