Wall clock time and date at job start Mon Mar 30 2020 02:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47016 * 2 1 4 4 C 1.50696 * 109.47338 * 239.99704 * 2 1 3 5 5 H 1.07994 * 119.99958 * 240.00355 * 4 2 1 6 6 C 1.37876 * 119.99918 * 59.99861 * 4 2 1 7 7 N 1.31515 * 120.00164 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47066 * 89.99777 * 8 6 4 10 10 H 1.48492 * 109.47242 * 210.00039 * 8 6 4 11 11 H 1.48503 * 109.47120 * 330.00305 * 8 6 4 12 12 S 1.81404 * 109.46820 * 119.99463 * 2 1 3 13 13 O 1.42098 * 109.47083 * 292.50555 * 12 2 1 14 14 C 1.81408 * 102.99843 * 176.11759 * 12 2 1 15 15 H 1.09001 * 110.43582 * 294.04359 * 14 12 2 16 16 C 1.54804 * 110.48529 * 171.35019 * 14 12 2 17 17 C 1.55001 * 102.09346 * 220.44373 * 16 14 12 18 18 O 1.44382 * 103.48604 * 37.02453 * 17 16 14 19 19 C 1.43744 * 106.97877 * 319.93922 * 18 17 16 20 20 H 1.08996 * 109.46906 * 54.11316 * 1 2 3 21 21 H 1.09001 * 109.46887 * 174.11334 * 1 2 3 22 22 H 1.09005 * 109.46794 * 294.11743 * 1 2 3 23 23 H 0.96996 * 119.99873 * 180.02562 * 7 6 4 24 24 H 1.08996 * 110.91531 * 338.64610 * 16 14 12 25 25 H 1.09003 * 110.90521 * 102.25289 * 16 14 12 26 26 H 1.09000 * 110.61732 * 278.52750 * 17 16 14 27 27 H 1.08993 * 110.75305 * 155.59221 * 17 16 14 28 28 H 1.08996 * 109.87758 * 267.08852 * 19 18 17 29 29 H 1.08999 * 109.87615 * 145.93313 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4117 10 1 2.4867 -0.1417 -5.1122 11 1 3.6294 -1.7585 -3.7120 12 16 2.1347 -0.8550 1.4813 13 8 1.8090 -0.0918 2.6348 14 6 3.9334 -0.8572 1.2456 15 1 4.2041 -1.4729 0.3879 16 6 4.6467 -1.3600 2.5241 17 6 5.8639 -0.4046 2.6139 18 8 5.3323 0.8610 2.1666 19 6 4.4550 0.5813 1.0629 20 1 -0.3633 0.6024 -0.8326 21 1 -0.3633 -1.0223 -0.1054 22 1 -0.3633 0.4199 0.9380 23 1 0.7090 1.1612 -3.4844 24 1 4.0026 -1.2525 3.3969 25 1 4.9716 -2.3939 2.4072 26 1 6.6642 -0.7395 1.9540 27 1 6.2211 -0.3296 3.6409 28 1 5.0035 0.6603 0.1243 29 1 3.6199 1.2817 1.0666 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703065215.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:41 Heat of formation + Delta-G solvation = -90.963824 kcal Electronic energy + Delta-G solvation = -13426.059823 eV Core-core repulsion = 11054.828811 eV Total energy + Delta-G solvation = -2371.231012 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.75414 -34.69916 -34.06740 -31.73649 -30.42590 -28.83603 -25.33238 -22.65348 -21.72601 -20.80346 -17.17762 -16.34650 -16.12757 -15.74892 -15.10170 -14.65794 -14.05960 -13.40068 -13.24257 -12.62742 -12.29520 -11.93179 -11.64739 -11.26144 -11.16524 -11.03679 -10.89839 -10.82228 -10.47734 -10.45715 -10.30022 -9.43327 -9.21621 -8.75478 -8.57451 -7.16590 -6.17685 -4.31294 2.50821 3.19799 3.27459 3.28026 3.63104 4.25256 4.27030 4.71672 4.87547 5.12810 5.22636 5.31831 5.62525 5.70080 5.89742 5.92894 6.07949 6.23223 6.37197 6.59998 6.73622 6.79916 7.17116 7.31396 7.59233 7.74429 8.03867 8.70641 9.35290 10.88100 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.011040 C = 0.009370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.337445 B = 2535.707895 C = 2987.530668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.220 4.220 3 H 0.047 0.953 4 C -0.512 4.512 5 H 0.071 0.929 6 C 0.072 3.928 7 N -0.880 5.880 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.271 1.271 12 S 1.191 4.809 13 O -0.878 6.878 14 C -0.432 4.432 15 H 0.133 0.867 16 C -0.129 4.129 17 C 0.050 3.950 18 O -0.384 6.384 19 C 0.071 3.929 20 H 0.091 0.909 21 H 0.043 0.957 22 H 0.015 0.985 23 H 0.263 0.737 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 -7.217 4.071 9.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.342 4.342 3 H 0.065 0.935 4 C -0.551 4.551 5 H 0.089 0.911 6 C -0.133 4.133 7 N -0.517 5.517 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.196 1.196 12 S 1.394 4.606 13 O -0.874 6.874 14 C -0.547 4.547 15 H 0.151 0.849 16 C -0.167 4.167 17 C -0.027 4.027 18 O -0.303 6.303 19 C -0.006 4.006 20 H 0.110 0.890 21 H 0.062 0.938 22 H 0.034 0.966 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.776 -7.253 4.841 9.943 hybrid contribution 1.039 1.547 -1.403 2.332 sum 5.815 -5.706 3.439 8.843 Atomic orbital electron populations 1.21482 0.94988 1.01218 1.00379 1.24650 0.99673 1.04157 1.05708 0.93492 1.20519 1.32839 1.12870 0.88879 0.91143 1.24971 0.94534 0.94670 0.99110 1.69904 1.35584 1.22385 1.23791 0.86527 0.79408 0.79421 0.82323 1.20245 1.21243 1.19580 1.69679 0.85408 1.20071 0.85415 1.92968 1.76666 1.76715 1.41043 1.28910 1.21622 1.00930 1.03278 0.84885 1.22850 0.97080 0.99986 0.96807 1.23493 0.95653 0.83952 0.99622 1.88812 1.62655 1.28499 1.50328 1.23095 0.93461 0.94354 0.89704 0.89024 0.93763 0.96624 0.92652 0.90420 0.89618 0.92415 0.89536 0.91786 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 8.89 37.16 0.33 -2.49 15 2 C -0.22 -5.18 2.38 -27.88 -0.07 -5.24 15 3 H 0.05 1.25 7.03 -51.92 -0.37 0.88 15 4 C -0.51 -12.24 8.09 -34.44 -0.28 -12.52 15 5 H 0.07 1.51 6.89 -52.49 -0.36 1.15 15 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 15 7 N -0.88 -23.79 11.39 55.43 0.63 -23.16 15 8 Si 0.90 19.37 29.54 -169.99 -5.02 14.35 15 9 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 15 11 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 12 S 1.19 23.35 11.89 -107.50 -1.28 22.07 15 13 O -0.88 -21.60 17.80 -35.23 -0.63 -22.22 15 14 C -0.43 -7.56 3.12 -25.20 -0.08 -7.64 15 15 H 0.13 2.10 7.35 -51.93 -0.38 1.72 15 16 C -0.13 -1.92 6.72 -24.72 -0.17 -2.08 15 17 C 0.05 0.75 7.72 38.21 0.29 1.05 15 18 O -0.38 -7.59 11.52 -35.23 -0.41 -8.00 15 19 C 0.07 1.41 7.10 37.73 0.27 1.68 15 20 H 0.09 2.34 6.25 -51.93 -0.32 2.02 15 21 H 0.04 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 15 23 H 0.26 6.81 8.31 -40.82 -0.34 6.47 15 24 H 0.08 1.25 7.55 -51.93 -0.39 0.85 15 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 27 H 0.09 1.12 8.14 -51.93 -0.42 0.69 15 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 29 H 0.08 1.72 6.36 -51.93 -0.33 1.39 15 LS Contribution 251.37 15.07 3.79 3.79 Total: -1.00 -31.60 251.37 -6.53 -38.13 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.83 Total: 0.55 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 0.21 Total: -25.51 kcal Atomic # 7 Polarization: -23.79 SS G_CDS: 0.63 Total: -23.16 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.03 Total: -30.22 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: 23.35 SS G_CDS: -1.28 Total: 22.07 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.60 -6.53 -38.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703065215.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.834 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds