Wall clock time and date at job start Mon Mar 30 2020 02:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47016 * 2 1 4 4 C 1.50696 * 109.47338 * 239.99704 * 2 1 3 5 5 H 1.07994 * 119.99958 * 240.00355 * 4 2 1 6 6 C 1.37876 * 119.99918 * 59.99861 * 4 2 1 7 7 N 1.31515 * 120.00164 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47066 * 89.99777 * 8 6 4 10 10 H 1.48492 * 109.47242 * 210.00039 * 8 6 4 11 11 H 1.48503 * 109.47120 * 330.00305 * 8 6 4 12 12 S 1.81404 * 109.46820 * 119.99463 * 2 1 3 13 13 O 1.42098 * 109.47083 * 292.50555 * 12 2 1 14 14 C 1.81408 * 102.99843 * 176.11759 * 12 2 1 15 15 H 1.09001 * 110.43582 * 294.04359 * 14 12 2 16 16 C 1.54804 * 110.48529 * 171.35019 * 14 12 2 17 17 C 1.55001 * 102.09346 * 220.44373 * 16 14 12 18 18 O 1.44382 * 103.48604 * 37.02453 * 17 16 14 19 19 C 1.43744 * 106.97877 * 319.93922 * 18 17 16 20 20 H 1.08996 * 109.46906 * 54.11316 * 1 2 3 21 21 H 1.09001 * 109.46887 * 174.11334 * 1 2 3 22 22 H 1.09005 * 109.46794 * 294.11743 * 1 2 3 23 23 H 0.96996 * 119.99873 * 180.02562 * 7 6 4 24 24 H 1.08996 * 110.91531 * 338.64610 * 16 14 12 25 25 H 1.09003 * 110.90521 * 102.25289 * 16 14 12 26 26 H 1.09000 * 110.61732 * 278.52750 * 17 16 14 27 27 H 1.08993 * 110.75305 * 155.59221 * 17 16 14 28 28 H 1.08996 * 109.87758 * 267.08852 * 19 18 17 29 29 H 1.08999 * 109.87615 * 145.93313 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4117 10 1 2.4867 -0.1417 -5.1122 11 1 3.6294 -1.7585 -3.7120 12 16 2.1347 -0.8550 1.4813 13 8 1.8090 -0.0918 2.6348 14 6 3.9334 -0.8572 1.2456 15 1 4.2041 -1.4729 0.3879 16 6 4.6467 -1.3600 2.5241 17 6 5.8639 -0.4046 2.6139 18 8 5.3323 0.8610 2.1666 19 6 4.4550 0.5813 1.0629 20 1 -0.3633 0.6024 -0.8326 21 1 -0.3633 -1.0223 -0.1054 22 1 -0.3633 0.4199 0.9380 23 1 0.7090 1.1612 -3.4844 24 1 4.0026 -1.2525 3.3969 25 1 4.9716 -2.3939 2.4072 26 1 6.6642 -0.7395 1.9540 27 1 6.2211 -0.3296 3.6409 28 1 5.0035 0.6603 0.1243 29 1 3.6199 1.2817 1.0666 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703065215.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:41 Heat of formation + Delta-G solvation = -114.353228 kcal Electronic energy + Delta-G solvation = -13427.074064 eV Core-core repulsion = 11054.828811 eV Total energy + Delta-G solvation = -2372.245253 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.14974 -36.55661 -35.94139 -33.12419 -32.32543 -30.20399 -27.24157 -24.03371 -23.48655 -22.24985 -18.88094 -18.03114 -17.64750 -17.22999 -16.82273 -16.13440 -15.69525 -15.12828 -14.93476 -14.18593 -13.89709 -13.56180 -13.31743 -12.89343 -12.74751 -12.61388 -12.58266 -12.34545 -12.26900 -12.06657 -11.84624 -11.08950 -10.80954 -10.57847 -10.39874 -8.91637 -8.07625 -6.27034 0.90762 1.52641 1.53553 1.62401 1.97331 2.48034 2.91924 3.10689 3.21859 3.47873 3.89978 4.14680 4.18346 4.38700 4.62012 4.70403 4.75843 4.79194 4.83201 4.90591 4.91593 5.08026 5.41270 5.67171 5.81289 5.86286 6.12375 6.84151 7.43582 8.98823 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.033076 B = 0.011040 C = 0.009370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.337445 B = 2535.707895 C = 2987.530668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.238 4.238 3 H 0.001 0.999 4 C -0.509 4.509 5 H 0.101 0.899 6 C 0.015 3.985 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.301 1.301 11 H -0.250 1.250 12 S 1.261 4.739 13 O -0.930 6.930 14 C -0.429 4.429 15 H 0.164 0.836 16 C -0.125 4.125 17 C 0.040 3.960 18 O -0.413 6.413 19 C 0.068 3.932 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.012 0.988 23 H 0.259 0.741 24 H 0.062 0.938 25 H 0.136 0.864 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 -10.099 4.130 13.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.359 4.359 3 H 0.019 0.981 4 C -0.548 4.548 5 H 0.119 0.881 6 C -0.185 4.185 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.227 1.227 11 H -0.174 1.174 12 S 1.465 4.535 13 O -0.926 6.926 14 C -0.546 4.546 15 H 0.181 0.819 16 C -0.163 4.163 17 C -0.036 4.036 18 O -0.333 6.333 19 C -0.010 4.010 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.031 0.969 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.154 0.846 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.089 0.911 29 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.745 -10.149 4.911 13.138 hybrid contribution 0.519 2.462 -1.335 2.848 sum 7.263 -7.687 3.577 11.164 Atomic orbital electron populations 1.21409 0.95403 1.02011 0.98994 1.24830 0.99892 1.02299 1.08869 0.98106 1.20997 1.32062 1.13095 0.88598 0.88081 1.25880 0.94855 0.95299 1.02504 1.70091 1.37616 1.24468 1.24026 0.85504 0.79799 0.78003 0.78133 1.19526 1.22733 1.17352 1.68918 0.86349 1.16656 0.81582 1.92866 1.79212 1.77311 1.43230 1.28917 1.19161 1.00221 1.06348 0.81856 1.22970 0.96312 1.02739 0.94296 1.23885 0.96205 0.81969 1.01519 1.88784 1.62775 1.31550 1.50237 1.23009 0.92677 0.94846 0.90433 0.91886 0.91423 0.96935 0.93185 0.91885 0.84622 0.89654 0.87419 0.91081 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.89 71.98 0.64 -5.03 15 2 C -0.24 -11.38 2.38 29.85 0.07 -11.31 15 3 H 0.00 0.04 7.03 -2.39 -0.02 0.02 15 4 C -0.51 -23.71 8.09 25.60 0.21 -23.50 15 5 H 0.10 3.97 6.89 -2.91 -0.02 3.95 15 6 C 0.01 0.74 5.30 84.65 0.45 1.19 15 7 N -0.92 -51.40 11.39 21.45 0.24 -51.16 15 8 Si 0.96 38.77 29.54 68.60 2.03 40.80 15 9 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 10 H -0.30 -12.73 7.11 99.48 0.71 -12.02 15 11 H -0.25 -9.17 7.11 99.48 0.71 -8.46 15 12 S 1.26 47.97 11.89 -56.49 -0.67 47.30 15 13 O -0.93 -45.92 17.80 -148.98 -2.65 -48.57 15 14 C -0.43 -13.75 3.12 31.58 0.10 -13.66 15 15 H 0.16 4.32 7.35 -2.39 -0.02 4.31 15 16 C -0.12 -3.19 6.72 31.89 0.21 -2.97 15 17 C 0.04 1.06 7.72 72.67 0.56 1.63 15 18 O -0.41 -15.84 11.52 -148.98 -1.72 -17.55 15 19 C 0.07 2.66 7.10 72.36 0.51 3.17 15 20 H 0.06 3.36 6.25 -2.39 -0.01 3.34 15 21 H 0.07 2.82 8.14 -2.39 -0.02 2.80 15 22 H 0.01 0.55 8.14 -2.38 -0.02 0.53 15 23 H 0.26 13.87 8.31 -92.71 -0.77 13.10 15 24 H 0.06 1.82 7.55 -2.39 -0.02 1.81 15 25 H 0.14 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.09 1.81 8.14 -2.39 -0.02 1.79 15 27 H 0.11 2.37 8.14 -2.39 -0.02 2.35 15 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 29 H 0.04 1.66 6.36 -2.39 -0.02 1.65 15 Total: -1.00 -70.69 251.37 1.12 -69.57 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.13 Total: 10.09 kcal Atomic # 6 Polarization: -53.24 SS G_CDS: 2.75 Total: -50.48 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.24 Total: -51.16 kcal Atomic # 8 Polarization: -61.75 SS G_CDS: -4.37 Total: -66.12 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Atomic # 16 Polarization: 47.97 SS G_CDS: -0.67 Total: 47.30 kcal Total: -70.69 1.12 -69.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703065215.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.781 kcal (2) G-P(sol) polarization free energy of solvation -70.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds