Wall clock time and date at job start Mon Mar 30 2020 02:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.89477 * 2 1 4 4 C 1.54376 * 109.82641 * 120.93172 * 2 1 3 5 5 C 1.55312 * 102.25316 * 98.15772 * 4 2 1 6 6 H 1.09003 * 111.12163 * 276.17139 * 5 4 2 7 7 S 1.81394 * 111.12663 * 152.04793 * 5 4 2 8 8 O 1.42105 * 109.47009 * 79.44386 * 7 5 4 9 9 C 1.76197 * 102.99885 * 188.49843 * 7 5 4 10 10 H 1.07993 * 120.00168 * 0.02562 * 9 7 5 11 11 C 1.37883 * 120.00125 * 180.02562 * 9 7 5 12 12 N 1.31516 * 119.99786 * 0.02562 * 11 9 7 13 13 Si 1.86792 * 120.00305 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47334 * 59.99829 * 13 11 9 15 15 H 1.48498 * 109.47354 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47089 * 299.99987 * 13 11 9 17 17 C 1.54946 * 100.97615 * 34.10834 * 5 4 2 18 18 O 1.43231 * 109.83059 * 239.06621 * 2 1 3 19 19 H 1.09004 * 109.47138 * 299.06693 * 1 2 3 20 20 H 1.09005 * 109.47060 * 59.06521 * 1 2 3 21 21 H 1.08998 * 109.47170 * 179.06743 * 1 2 3 22 22 H 1.08998 * 109.46719 * 180.93039 * 3 2 1 23 23 H 1.08995 * 109.47409 * 300.93149 * 3 2 1 24 24 H 1.09000 * 109.46730 * 60.93541 * 3 2 1 25 25 H 1.08997 * 110.85130 * 339.96697 * 4 2 1 26 26 H 1.08998 * 111.02544 * 216.42313 * 4 2 1 27 27 H 0.97002 * 120.00371 * 180.02562 * 12 11 9 28 28 H 1.09002 * 110.31250 * 82.49813 * 17 5 4 29 29 H 1.09006 * 110.30871 * 204.66176 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0537 -0.7465 1.2457 5 6 2.3681 -2.1570 0.6768 6 1 1.4731 -2.7787 0.6514 7 16 3.6920 -2.9622 1.6198 8 8 3.1574 -3.5017 2.8209 9 6 4.0435 -4.3988 0.6621 10 1 3.4941 -4.5888 -0.2480 11 6 5.0202 -5.2804 1.0746 12 7 5.6890 -5.0492 2.1832 13 14 5.3924 -6.8037 0.0597 14 1 5.8270 -6.3979 -1.3012 15 1 6.4755 -7.5815 0.7133 16 1 4.1711 -7.6425 -0.0403 17 6 2.8403 -1.7992 -0.7549 18 8 2.0160 -0.6926 -1.1557 19 1 -0.3633 0.4993 0.8983 20 1 -0.3633 0.5283 -0.8815 21 1 -0.3633 -1.0275 -0.0167 22 1 3.1406 1.4306 -0.0167 23 1 1.6777 1.9601 -0.8815 24 1 1.7049 1.9502 0.8983 25 1 1.2850 -0.8016 2.0165 26 1 2.9565 -0.2747 1.6336 27 1 6.3763 -5.6692 2.4732 28 1 3.8897 -1.5045 -0.7446 29 1 2.6909 -2.6457 -1.4252 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703084984.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:39 Heat of formation + Delta-G solvation = -132.586783 kcal Electronic energy + Delta-G solvation = -13257.369474 eV Core-core repulsion = 10884.333555 eV Total energy + Delta-G solvation = -2373.035919 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.52532 -35.87769 -34.91835 -34.01026 -32.66122 -28.18345 -28.06468 -26.52516 -23.00766 -20.94882 -19.95384 -17.69410 -17.40591 -16.99693 -16.44266 -15.66067 -15.24059 -14.65692 -14.61592 -14.31486 -13.95529 -13.57534 -13.19563 -13.10548 -12.87991 -12.84417 -12.52602 -12.48364 -12.25261 -11.87877 -11.73746 -11.55147 -11.05758 -10.38934 -10.35014 -8.94483 -8.41119 -6.96837 1.28573 1.35426 1.44118 1.68755 2.24253 2.77103 2.97924 3.19034 3.65131 3.80234 3.98176 4.14504 4.26725 4.34588 4.44689 4.73343 4.78959 4.81828 4.89134 4.99542 5.05681 5.06731 5.17156 5.33573 5.38998 5.48534 6.07489 6.22395 6.97622 8.41785 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.051458 B = 0.008651 C = 0.008001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.000908 B = 3235.793139 C = 3498.905239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.096 3.904 3 C -0.149 4.149 4 C -0.115 4.115 5 C -0.471 4.471 6 H 0.054 0.946 7 S 1.383 4.617 8 O -0.976 6.976 9 C -0.850 4.850 10 H 0.081 0.919 11 C 0.068 3.932 12 N -0.888 5.888 13 Si 0.969 3.031 14 H -0.242 1.242 15 H -0.268 1.268 16 H -0.281 1.281 17 C 0.095 3.905 18 O -0.393 6.393 19 H 0.083 0.917 20 H 0.069 0.931 21 H 0.035 0.965 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.288 0.712 28 H 0.093 0.907 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 11.295 -5.998 12.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.585 4.585 6 H 0.073 0.927 7 S 1.585 4.415 8 O -0.971 6.971 9 C -0.991 4.991 10 H 0.100 0.900 11 C -0.143 4.143 12 N -0.522 5.522 13 Si 0.790 3.210 14 H -0.165 1.165 15 H -0.192 1.192 16 H -0.207 1.207 17 C 0.018 3.982 18 O -0.313 6.313 19 H 0.101 0.899 20 H 0.088 0.912 21 H 0.054 0.946 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.495 11.638 -5.195 12.832 hybrid contribution -1.776 -2.854 -0.329 3.377 sum -3.271 8.784 -5.523 10.879 Atomic orbital electron populations 1.22093 0.94132 1.01402 1.03264 1.22262 0.94397 0.93456 0.84236 1.22096 1.02248 0.93019 1.03281 1.22932 1.02792 0.91713 0.97900 1.29579 1.15263 1.05423 1.08233 0.92693 1.68040 0.96481 0.98895 0.78118 1.92706 1.78591 1.82471 1.43351 1.27747 1.26912 1.25729 1.18684 0.90013 1.25708 0.92984 1.00715 0.94847 1.69956 1.21767 1.38828 1.21622 0.85465 0.77960 0.77479 0.80048 1.16546 1.19227 1.20688 1.22893 0.95530 0.88541 0.91231 1.88315 1.67897 1.43934 1.31166 0.89855 0.91164 0.94553 0.91238 0.91507 0.89732 0.90865 0.87778 0.90266 0.88859 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 8.73 71.98 0.63 -3.27 15 2 C 0.10 2.71 1.27 -10.32 -0.01 2.70 15 3 C -0.15 -3.12 8.75 71.98 0.63 -2.49 15 4 C -0.12 -3.66 5.58 31.86 0.18 -3.49 15 5 C -0.47 -18.82 3.62 32.05 0.12 -18.71 15 6 H 0.05 2.47 8.14 -2.39 -0.02 2.45 15 7 S 1.38 67.45 12.50 -56.49 -0.71 66.75 15 8 O -0.98 -61.54 17.82 -148.98 -2.65 -64.19 15 9 C -0.85 -45.95 9.05 67.74 0.61 -45.34 15 10 H 0.08 4.25 7.81 -2.91 -0.02 4.22 15 11 C 0.07 3.69 5.46 84.66 0.46 4.15 15 12 N -0.89 -50.40 13.15 21.45 0.28 -50.11 15 13 Si 0.97 41.64 29.54 68.60 2.03 43.67 15 14 H -0.24 -9.45 7.11 99.48 0.71 -8.74 15 15 H -0.27 -10.89 7.11 99.48 0.71 -10.19 15 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 17 C 0.09 3.31 6.93 72.65 0.50 3.81 15 18 O -0.39 -13.07 10.68 -148.98 -1.59 -14.66 15 19 H 0.08 1.76 8.14 -2.38 -0.02 1.75 15 20 H 0.07 1.61 8.14 -2.38 -0.02 1.59 15 21 H 0.04 1.07 8.14 -2.39 -0.02 1.05 15 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 15 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 15 24 H 0.08 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.07 2.33 7.82 -2.39 -0.02 2.31 15 26 H 0.10 2.81 7.74 -2.39 -0.02 2.79 15 27 H 0.29 14.98 8.31 -92.71 -0.77 14.21 15 28 H 0.09 2.82 8.02 -2.39 -0.02 2.81 15 29 H 0.07 2.68 8.14 -2.38 -0.02 2.66 15 Total: -1.00 -73.55 259.22 1.59 -71.95 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.12 Total: 9.23 kcal Atomic # 6 Polarization: -65.75 SS G_CDS: 3.12 Total: -62.63 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.28 Total: -50.11 kcal Atomic # 8 Polarization: -74.61 SS G_CDS: -4.24 Total: -78.85 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 67.45 SS G_CDS: -0.71 Total: 66.75 kcal Total: -73.55 1.59 -71.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703084984.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.633 kcal (2) G-P(sol) polarization free energy of solvation -73.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds