Wall clock time and date at job start Mon Mar 30 2020 02:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 11 11 N 1.46893 * 109.47176 * 60.00425 * 9 7 2 12 12 C 1.50699 * 109.46817 * 180.02562 * 9 7 2 13 13 C 1.34196 * 124.91856 * 99.72015 * 12 9 7 14 14 C 1.46319 * 106.16635 * 179.86130 * 13 12 9 15 15 C 1.39598 * 135.56968 * 180.08812 * 14 13 12 16 16 C 1.36762 * 118.66253 * 180.33032 * 15 14 13 17 17 N 1.32238 * 121.19478 * 0.02562 * 16 15 14 18 18 C 1.31776 * 122.59064 * 359.93258 * 17 16 15 19 19 C 1.38717 * 120.32957 * 0.08621 * 18 17 16 20 20 O 1.34424 * 124.91683 * 280.02284 * 12 9 7 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.00892 * 111.00624 * 59.99798 * 11 9 7 23 23 H 1.00900 * 111.00217 * 183.95659 * 11 9 7 24 24 H 1.08006 * 126.91811 * 0.02562 * 13 12 9 25 25 H 1.08005 * 120.67039 * 0.35764 * 15 14 13 26 26 H 1.07992 * 119.40609 * 180.02562 * 16 15 14 27 27 H 1.08009 * 119.83714 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 0.4061 -2.5767 -1.1996 12 6 2.2303 -3.6446 -0.0005 13 6 2.5883 -4.3491 1.0840 14 6 3.5464 -5.3528 0.6198 15 6 4.2840 -6.3775 1.2155 16 6 5.1116 -7.1319 0.4304 17 7 5.2195 -6.9042 -0.8677 18 6 4.5458 -5.9512 -1.4796 19 6 3.6819 -5.1345 -0.7649 20 8 2.8761 -4.1047 -1.0860 21 1 -0.4849 0.8400 0.0004 22 1 0.9637 -2.5251 -2.0389 23 1 -0.1579 -3.4133 -1.1911 24 1 2.2375 -4.2061 2.0955 25 1 4.2024 -6.5709 2.2750 26 1 5.6874 -7.9279 0.8787 27 1 4.6677 -5.8046 -2.5428 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713748789.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:21 Heat of formation + Delta-G solvation = 38.682127 kcal Electronic energy + Delta-G solvation = -13920.719043 eV Core-core repulsion = 11451.958701 eV Total energy + Delta-G solvation = -2468.760342 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.17416 -38.75219 -34.78609 -32.85911 -31.66169 -30.46684 -29.40123 -26.24386 -23.82675 -23.02932 -21.45909 -20.47064 -17.43165 -17.01289 -16.51632 -15.60956 -15.52000 -14.73945 -14.35832 -14.14446 -13.84965 -13.16083 -12.63248 -12.53021 -12.24493 -11.60105 -11.43455 -10.92475 -10.85691 -10.29224 -10.11197 -9.61230 -9.49206 -8.60925 -8.57173 -7.96406 -7.41767 -6.06388 -4.23933 1.06024 1.46636 2.87044 3.11273 3.28104 3.32589 3.36367 3.96794 4.35831 4.53145 4.72826 4.91068 5.18799 5.27224 5.34618 5.69322 5.85106 5.98448 6.09054 6.18143 6.40575 6.62064 6.79567 6.99165 7.54973 7.71387 7.86933 8.06520 8.37504 8.76538 8.88175 9.45904 10.97673 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.048781 B = 0.007291 C = 0.007091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.856567 B = 3839.583814 C = 3947.681578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.088 3.912 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.289 3.711 10 H 0.077 0.923 11 N -0.807 5.807 12 C 0.082 3.918 13 C -0.257 4.257 14 C -0.081 4.081 15 C -0.134 4.134 16 C 0.059 3.941 17 N -0.474 5.474 18 C 0.133 3.867 19 C -0.020 4.020 20 O -0.180 6.180 21 H 0.261 0.739 22 H 0.328 0.672 23 H 0.303 0.697 24 H 0.156 0.844 25 H 0.133 0.867 26 H 0.155 0.845 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.154 -9.542 0.827 10.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.121 4.121 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.075 0.925 9 C 0.179 3.821 10 H 0.095 0.905 11 N -0.332 5.332 12 C 0.029 3.971 13 C -0.277 4.277 14 C -0.089 4.089 15 C -0.154 4.154 16 C -0.091 4.091 17 N -0.184 5.184 18 C -0.031 4.031 19 C -0.070 4.070 20 O -0.079 6.079 21 H 0.071 0.929 22 H 0.140 0.860 23 H 0.114 0.886 24 H 0.174 0.826 25 H 0.151 0.849 26 H 0.173 0.827 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.152 -9.179 0.380 10.533 hybrid contribution 0.530 0.476 0.580 0.919 sum 5.682 -8.704 0.961 10.438 Atomic orbital electron populations 1.70068 1.05733 1.26494 1.45432 1.24904 0.94749 0.98766 0.93643 0.86657 0.79662 0.82829 0.78783 1.20104 1.21082 1.20156 1.20697 0.92466 0.88832 1.56132 0.92464 1.18402 0.85234 0.85925 0.92582 0.90537 1.59032 1.27684 1.42049 1.04430 1.25799 0.93104 0.95289 0.82929 1.22143 1.05118 0.99898 1.00516 1.20332 0.97972 0.96994 0.93621 1.21210 0.97472 0.95491 1.01251 1.22118 0.98115 0.99554 0.89293 1.67680 1.21891 1.17004 1.11857 1.21727 0.91474 0.89975 0.99907 1.20997 0.97989 0.92918 0.95123 1.84023 1.47284 1.40087 1.36493 0.92915 0.85954 0.88600 0.82589 0.84891 0.82725 0.82149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.37 12.77 55.43 0.71 -22.66 15 2 C 0.09 2.34 5.39 -17.82 -0.10 2.24 15 3 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.54 -14.40 8.71 -34.44 -0.30 -14.70 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 9 C 0.29 6.85 3.05 -70.02 -0.21 6.63 15 10 H 0.08 1.90 8.12 -51.93 -0.42 1.48 15 11 N -0.81 -18.21 8.52 -6.65 -0.06 -18.26 15 12 C 0.08 1.73 6.00 -35.73 -0.21 1.52 15 13 C -0.26 -4.96 10.98 -37.76 -0.41 -5.37 15 14 C -0.08 -1.47 6.47 -105.16 -0.68 -2.15 15 15 C -0.13 -1.98 10.12 -39.61 -0.40 -2.38 15 16 C 0.06 0.82 11.12 -17.91 -0.20 0.62 15 17 N -0.47 -7.37 10.32 -13.42 -0.14 -7.51 15 18 C 0.13 2.12 11.24 -17.40 -0.20 1.92 15 19 C -0.02 -0.37 7.47 -38.42 -0.29 -0.66 15 20 O -0.18 -3.71 10.39 4.47 0.05 -3.67 15 21 H 0.26 6.92 8.31 -40.82 -0.34 6.58 15 22 H 0.33 7.26 8.84 -39.30 -0.35 6.91 15 23 H 0.30 6.04 9.06 -39.29 -0.36 5.68 15 24 H 0.16 2.71 8.06 -52.48 -0.42 2.29 15 25 H 0.13 1.57 8.06 -52.48 -0.42 1.15 15 26 H 0.16 1.58 8.06 -52.49 -0.42 1.16 15 27 H 0.16 2.10 8.06 -52.48 -0.42 1.67 15 LS Contribution 247.70 15.07 3.73 3.73 Total: -1.00 -28.91 247.70 -6.09 -35.00 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -2.36 Total: 10.03 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -3.00 Total: -12.32 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 0.51 Total: -48.44 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: 0.05 Total: -3.67 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.91 -6.09 -35.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713748789.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.681 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds