Wall clock time and date at job start Mon Mar 30 2020 02:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47776 * 240.00080 * 3 2 1 5 5 H 1.48503 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 119.99683 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 11 11 N 1.46893 * 109.47176 * 60.00425 * 9 7 2 12 12 C 1.50699 * 109.46817 * 180.02562 * 9 7 2 13 13 C 1.34196 * 124.91856 * 99.72015 * 12 9 7 14 14 C 1.46319 * 106.16635 * 179.86130 * 13 12 9 15 15 C 1.39598 * 135.56968 * 180.08812 * 14 13 12 16 16 C 1.36762 * 118.66253 * 180.33032 * 15 14 13 17 17 N 1.32238 * 121.19478 * 0.02562 * 16 15 14 18 18 C 1.31776 * 122.59064 * 359.93258 * 17 16 15 19 19 C 1.38717 * 120.32957 * 0.08621 * 18 17 16 20 20 O 1.34424 * 124.91683 * 280.02284 * 12 9 7 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.00892 * 111.00624 * 59.99798 * 11 9 7 23 23 H 1.00900 * 111.00217 * 183.95659 * 11 9 7 24 24 H 1.08006 * 126.91811 * 0.02562 * 13 12 9 25 25 H 1.08005 * 120.67039 * 0.35764 * 15 14 13 26 26 H 1.07992 * 119.40609 * 180.02562 * 16 15 14 27 27 H 1.08009 * 119.83714 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 0.4061 -2.5767 -1.1996 12 6 2.2303 -3.6446 -0.0005 13 6 2.5883 -4.3491 1.0840 14 6 3.5464 -5.3528 0.6198 15 6 4.2840 -6.3775 1.2155 16 6 5.1116 -7.1319 0.4304 17 7 5.2195 -6.9042 -0.8677 18 6 4.5458 -5.9512 -1.4796 19 6 3.6819 -5.1345 -0.7649 20 8 2.8761 -4.1047 -1.0860 21 1 -0.4849 0.8400 0.0004 22 1 0.9637 -2.5251 -2.0389 23 1 -0.1579 -3.4133 -1.1911 24 1 2.2375 -4.2061 2.0955 25 1 4.2024 -6.5709 2.2750 26 1 5.6874 -7.9279 0.8787 27 1 4.6677 -5.8046 -2.5428 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713748789.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:21 Heat of formation + Delta-G solvation = 18.538342 kcal Electronic energy + Delta-G solvation = -13921.592543 eV Core-core repulsion = 11451.958701 eV Total energy + Delta-G solvation = -2469.633842 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.59237 -40.01979 -36.61335 -34.25763 -33.58530 -31.70774 -30.88942 -28.15570 -25.36124 -24.40399 -22.91352 -22.03863 -18.82621 -18.76915 -18.02331 -17.14496 -16.90262 -16.46893 -16.15149 -15.50249 -15.21206 -14.57681 -14.31996 -13.97513 -13.80504 -13.44027 -12.78723 -12.76031 -12.64666 -12.07704 -11.67327 -11.36832 -10.81517 -10.63121 -9.92057 -9.42994 -9.15750 -8.08778 -6.32540 -0.22483 0.18199 1.35459 1.43995 1.46025 1.53270 1.67587 2.43227 2.74496 3.15998 3.33200 3.52294 3.58010 4.01348 4.10552 4.27211 4.40241 4.61122 4.65308 4.89098 5.04797 5.06860 5.34659 5.52502 5.64414 5.90436 6.08668 6.48222 6.85724 6.88950 7.06925 7.40362 8.94442 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.048781 B = 0.007291 C = 0.007091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.856567 B = 3839.583814 C = 3947.681578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.044 3.956 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.044 0.956 9 C 0.294 3.706 10 H 0.057 0.943 11 N -0.815 5.815 12 C 0.051 3.949 13 C -0.249 4.249 14 C -0.102 4.102 15 C -0.129 4.129 16 C 0.066 3.934 17 N -0.477 5.477 18 C 0.131 3.869 19 C -0.044 4.044 20 O -0.196 6.196 21 H 0.262 0.738 22 H 0.329 0.671 23 H 0.317 0.683 24 H 0.169 0.831 25 H 0.166 0.834 26 H 0.199 0.801 27 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.681 -10.802 1.342 12.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.161 4.161 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.596 4.596 8 H 0.062 0.938 9 C 0.183 3.817 10 H 0.075 0.925 11 N -0.341 5.341 12 C -0.001 4.001 13 C -0.269 4.269 14 C -0.110 4.110 15 C -0.148 4.148 16 C -0.084 4.084 17 N -0.187 5.187 18 C -0.032 4.032 19 C -0.093 4.093 20 O -0.096 6.096 21 H 0.071 0.929 22 H 0.141 0.859 23 H 0.129 0.871 24 H 0.187 0.813 25 H 0.184 0.816 26 H 0.216 0.784 27 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 6.683 -10.452 0.900 12.438 hybrid contribution 0.153 0.685 0.448 0.833 sum 6.836 -9.767 1.348 11.998 Atomic orbital electron populations 1.70167 1.06885 1.27176 1.46414 1.25591 0.95507 1.01689 0.93318 0.85722 0.78517 0.79250 0.78683 1.20109 1.20439 1.19674 1.20940 0.92076 0.90602 1.56009 0.93771 1.17957 0.85517 0.86118 0.92060 0.92498 1.58891 1.27935 1.43127 1.04112 1.25176 0.94665 0.96201 0.84047 1.22393 1.04489 0.99496 1.00496 1.20572 0.98708 0.98030 0.93694 1.21621 0.96207 0.93939 1.03048 1.22854 0.97276 0.99661 0.88572 1.67809 1.21495 1.16499 1.12911 1.22157 0.90647 0.89400 1.01028 1.21457 0.98646 0.93078 0.96149 1.83938 1.48057 1.41172 1.36398 0.92917 0.85924 0.87093 0.81332 0.81637 0.78445 0.79913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.97 12.77 21.45 0.27 -48.70 15 2 C 0.04 2.40 5.39 84.66 0.46 2.85 15 3 Si 0.95 42.73 29.54 68.60 2.03 44.76 15 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 7 C -0.56 -30.26 8.71 25.60 0.22 -30.03 15 8 H 0.04 2.45 7.74 -2.91 -0.02 2.42 15 9 C 0.29 14.36 3.05 43.43 0.13 14.49 15 10 H 0.06 2.95 8.12 -2.39 -0.02 2.93 15 11 N -0.81 -37.72 8.52 -174.96 -1.49 -39.21 15 12 C 0.05 2.23 6.00 24.76 0.15 2.38 15 13 C -0.25 -9.57 10.98 23.45 0.26 -9.31 15 14 C -0.10 -3.55 6.47 -20.21 -0.13 -3.68 15 15 C -0.13 -3.36 10.12 22.25 0.23 -3.13 15 16 C 0.07 1.56 11.12 84.29 0.94 2.50 15 17 N -0.48 -13.35 10.32 -196.37 -2.03 -15.37 15 18 C 0.13 3.94 11.24 84.82 0.95 4.89 15 19 C -0.04 -1.58 7.47 23.02 0.17 -1.41 15 20 O -0.20 -8.20 10.39 -6.92 -0.07 -8.28 15 21 H 0.26 14.01 8.31 -92.71 -0.77 13.24 15 22 H 0.33 14.95 8.84 -89.70 -0.79 14.16 15 23 H 0.32 12.96 9.06 -89.69 -0.81 12.14 15 24 H 0.17 5.80 8.06 -2.91 -0.02 5.77 15 25 H 0.17 3.18 8.06 -2.91 -0.02 3.15 15 26 H 0.20 2.92 8.06 -2.91 -0.02 2.89 15 27 H 0.18 4.45 8.06 -2.91 -0.02 4.43 15 Total: -1.00 -61.98 247.70 1.70 -60.28 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.39 Total: 26.98 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 3.37 Total: -20.46 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -3.24 Total: -103.28 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.07 Total: -8.28 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -61.98 1.70 -60.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713748789.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.818 kcal (2) G-P(sol) polarization free energy of solvation -61.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds