Wall clock time and date at job start Mon Mar 30 2020 02:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86808 * 119.99779 * 2 1 4 4 H 1.48504 * 109.46993 * 270.00215 * 3 2 1 5 5 H 1.48496 * 109.46850 * 29.99947 * 3 2 1 6 6 H 1.48497 * 109.46754 * 149.99942 * 3 2 1 7 7 C 1.37871 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99799 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00056 * 180.02562 * 7 2 1 10 10 O 1.42902 * 109.47038 * 179.97438 * 9 7 2 11 11 C 1.35895 * 116.99970 * 179.97438 * 10 9 7 12 12 C 1.38748 * 120.09186 * 0.02562 * 11 10 9 13 13 C 1.38006 * 119.87745 * 180.02562 * 12 11 10 14 14 C 1.38542 * 120.29202 * 359.97438 * 13 12 11 15 15 C 1.38266 * 119.93797 * 0.02562 * 14 13 12 16 16 C 1.38416 * 119.90274 * 0.02562 * 15 14 13 17 17 C 1.51383 * 109.75351 * 180.02562 * 15 14 13 18 18 C 1.54339 * 105.17324 * 342.80716 * 17 15 14 19 19 C 1.51698 * 130.24225 * 179.84274 * 14 13 12 20 20 H 0.96993 * 119.99734 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.47032 * 59.99774 * 9 7 2 22 22 H 1.08997 * 109.46963 * 299.99745 * 9 7 2 23 23 H 1.08007 * 120.06382 * 0.02562 * 12 11 10 24 24 H 1.08006 * 119.85283 * 180.02562 * 13 12 11 25 25 H 1.07995 * 119.91041 * 180.02562 * 16 15 14 26 26 H 1.09000 * 110.30267 * 223.87989 * 17 15 14 27 27 H 1.08997 * 110.38024 * 101.77648 * 17 15 14 28 28 H 1.09002 * 110.82153 * 144.59302 * 18 17 15 29 29 H 1.09002 * 110.82354 * 267.94058 * 18 17 15 30 30 H 1.09003 * 110.25235 * 78.27189 * 19 14 13 31 31 H 1.08997 * 110.49495 * 316.02724 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 8 3.9880 -2.5412 -0.0001 11 6 5.3352 -2.7192 -0.0001 12 6 6.1822 -1.6202 0.0005 13 6 7.5497 -1.8061 -0.0001 14 6 8.0810 -3.0856 -0.0008 15 6 7.2390 -4.1824 -0.0014 16 6 5.8671 -3.9991 -0.0018 17 6 8.0576 -5.4558 -0.0014 18 6 9.4733 -5.0260 -0.4410 19 6 9.5262 -3.5466 -0.0047 20 1 -0.4849 0.8400 -0.0004 21 1 3.8746 -0.6806 0.8905 22 1 3.8753 -0.6795 -0.8894 23 1 5.7720 -0.6210 0.0014 24 1 8.2086 -0.9503 0.0007 25 1 5.2093 -4.8556 -0.0019 26 1 7.6426 -6.1722 -0.7103 27 1 8.0871 -5.8881 0.9988 28 1 10.2339 -5.6103 0.0767 29 1 9.5873 -5.1152 -1.5214 30 1 9.9518 -3.4625 0.9953 31 1 10.1110 -2.9630 -0.7157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020296951.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:19 Heat of formation + Delta-G solvation = -44.957271 kcal Electronic energy + Delta-G solvation = -13896.163355 eV Core-core repulsion = 11527.316480 eV Total energy + Delta-G solvation = -2368.846875 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.30726 -39.42415 -35.78350 -34.92497 -32.43810 -30.61557 -29.27233 -27.85804 -24.71669 -23.55979 -21.63122 -21.43280 -19.41023 -18.26964 -17.13483 -16.68831 -16.52058 -16.28864 -15.81875 -15.34442 -14.69028 -14.34286 -13.76534 -13.65227 -13.50220 -13.26591 -12.94579 -12.72049 -12.41959 -12.10324 -11.97565 -11.93626 -11.77953 -11.37059 -11.32111 -10.92891 -9.75593 -8.90258 -8.46896 -6.58200 0.35626 0.48781 1.28627 1.31723 1.42130 2.21708 2.49229 2.76008 2.85349 3.62284 3.70282 3.96209 4.16181 4.25458 4.30914 4.40540 4.46108 4.58903 4.73092 4.74814 4.91253 5.00079 5.07111 5.09788 5.18530 5.29831 5.36386 5.45061 5.51838 5.68211 5.80817 6.03345 6.45888 6.73507 7.06159 8.69798 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.062193 B = 0.006175 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.101267 B = 4533.317991 C = 4944.690893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.022 3.978 3 Si 0.951 3.049 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.245 1.245 7 C -0.557 4.557 8 H 0.034 0.966 9 C 0.183 3.817 10 O -0.336 6.336 11 C 0.106 3.894 12 C -0.228 4.228 13 C -0.068 4.068 14 C -0.152 4.152 15 C -0.067 4.067 16 C -0.168 4.168 17 C -0.082 4.082 18 C -0.113 4.113 19 C -0.071 4.071 20 H 0.277 0.723 21 H 0.025 0.975 22 H 0.024 0.976 23 H 0.124 0.876 24 H 0.147 0.853 25 H 0.122 0.878 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.274 -5.270 -0.117 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.177 4.177 3 Si 0.772 3.228 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.169 1.169 7 C -0.595 4.595 8 H 0.053 0.947 9 C 0.109 3.891 10 O -0.250 6.250 11 C 0.060 3.940 12 C -0.247 4.247 13 C -0.086 4.086 14 C -0.153 4.153 15 C -0.067 4.067 16 C -0.186 4.186 17 C -0.118 4.118 18 C -0.150 4.150 19 C -0.108 4.108 20 H 0.086 0.914 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.142 0.858 24 H 0.165 0.835 25 H 0.140 0.860 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 21.938 -5.309 -0.116 22.571 hybrid contribution -0.925 0.921 0.011 1.306 sum 21.013 -4.388 -0.105 21.466 Atomic orbital electron populations 1.69998 1.08176 1.29186 1.49847 1.25764 0.95826 1.03232 0.92912 0.85672 0.79559 0.77457 0.80154 1.17981 1.19165 1.16863 1.21015 0.89987 0.94450 1.54025 0.94721 1.20640 0.93722 0.78436 0.96277 1.86060 1.19069 1.31997 1.87836 1.19450 0.83006 0.95288 0.96278 1.21352 0.95090 0.98027 1.10221 1.20664 0.93140 0.97610 0.97173 1.21017 0.97910 0.92479 1.03858 1.20741 0.91261 0.98288 0.96417 1.19978 0.95323 0.94286 1.09059 1.21181 0.94382 0.93117 1.03151 1.22322 0.95613 0.95014 1.02071 1.21092 0.90222 0.96567 1.02908 0.91351 0.95691 0.95799 0.85814 0.83500 0.85954 0.89948 0.88906 0.88058 0.90526 0.89288 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.48 13.96 21.45 0.30 -58.18 16 2 C 0.02 1.31 5.47 84.65 0.46 1.77 16 3 Si 0.95 42.91 27.47 68.60 1.88 44.79 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.25 -10.22 6.54 99.48 0.65 -9.57 16 7 C -0.56 -34.48 9.99 25.60 0.26 -34.22 16 8 H 0.03 2.41 8.06 -2.91 -0.02 2.38 16 9 C 0.18 9.57 3.56 71.24 0.25 9.83 16 10 O -0.34 -17.21 10.12 -92.36 -0.93 -18.14 16 11 C 0.11 4.46 6.68 22.48 0.15 4.61 16 12 C -0.23 -8.41 9.04 22.34 0.20 -8.21 16 13 C -0.07 -1.97 10.03 22.29 0.22 -1.75 16 14 C -0.15 -3.98 6.15 -19.47 -0.12 -4.10 16 15 C -0.07 -1.90 6.13 -19.60 -0.12 -2.02 16 16 C -0.17 -6.06 9.98 22.40 0.22 -5.83 16 17 C -0.08 -1.54 6.77 30.52 0.21 -1.34 16 18 C -0.11 -1.57 7.07 31.50 0.22 -1.35 16 19 C -0.07 -1.19 6.79 30.62 0.21 -0.98 16 20 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 21 H 0.03 1.26 6.72 -2.38 -0.02 1.25 16 22 H 0.02 1.19 7.09 -2.39 -0.02 1.18 16 23 H 0.12 4.57 6.31 -2.91 -0.02 4.55 16 24 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 25 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.96 261.43 4.47 -66.49 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.06 Total: 8.62 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 2.17 Total: -43.58 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.30 Total: -58.18 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.93 Total: -18.14 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Total: -70.96 4.47 -66.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020296951.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.530 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds