Wall clock time and date at job start Mon Mar 30 2020 02:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.33839 * 304.67474 * 10 9 7 12 12 O 1.42731 * 109.33679 * 64.18510 * 10 9 7 13 13 C 1.43208 * 113.13649 * 171.94528 * 12 10 9 14 14 C 1.52973 * 108.46741 * 289.29853 * 13 12 10 15 15 C 1.50733 * 109.75300 * 49.23645 * 14 13 12 16 16 C 1.38602 * 118.76143 * 163.13017 * 15 14 13 17 17 C 1.38070 * 120.27773 * 179.75846 * 16 15 14 18 18 C 1.38258 * 119.86246 * 359.97438 * 17 16 15 19 19 C 1.38056 * 119.89529 * 0.09306 * 18 17 16 20 20 C 1.37906 * 121.35417 * 343.03685 * 15 14 13 21 21 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 22 22 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 23 23 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 24 24 H 1.09003 * 109.63571 * 169.60625 * 13 12 10 25 25 H 1.09001 * 109.63524 * 48.99419 * 13 12 10 26 26 H 1.09000 * 109.42586 * 289.14463 * 14 13 12 27 27 H 1.09008 * 109.42238 * 169.32129 * 14 13 12 28 28 H 1.08001 * 119.85932 * 359.72794 * 16 15 14 29 29 H 1.07995 * 120.07127 * 180.02562 * 17 16 15 30 30 H 1.07999 * 120.05343 * 180.09445 * 18 17 16 31 31 H 1.07997 * 119.84835 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 1 2.9246 -3.5599 -0.8297 12 8 2.9981 -3.6349 1.2289 13 6 3.8253 -4.7908 1.4036 14 6 2.9240 -5.9920 1.6953 15 6 1.8118 -6.0528 0.6798 16 6 1.1010 -7.2343 0.5392 17 6 0.0727 -7.3232 -0.3779 18 6 -0.2497 -6.2288 -1.1590 19 6 0.4588 -5.0520 -1.0205 20 6 1.4930 -4.9620 -0.1015 21 1 -0.4850 0.8401 -0.0041 22 1 0.6241 -2.5528 0.9015 23 1 0.6247 -2.5609 -0.8785 24 1 4.5054 -4.6315 2.2404 25 1 4.3962 -4.9737 0.4933 26 1 2.4983 -5.8918 2.6937 27 1 3.5127 -6.9079 1.6434 28 1 1.3528 -8.0892 1.1492 29 1 -0.4792 -8.2453 -0.4845 30 1 -1.0544 -6.2944 -1.8762 31 1 0.2066 -4.1978 -1.6312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034247016.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:03 Heat of formation + Delta-G solvation = -32.916736 kcal Electronic energy + Delta-G solvation = -14424.150546 eV Core-core repulsion = 12055.825788 eV Total energy + Delta-G solvation = -2368.324758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.83690 -36.97429 -33.76006 -32.31645 -31.44667 -29.38011 -27.81873 -24.56754 -23.39835 -22.47723 -20.53281 -19.54410 -16.87941 -16.06704 -15.70284 -15.24353 -14.81839 -14.48271 -13.85778 -13.56887 -13.17853 -12.66569 -12.50740 -11.95712 -11.84175 -11.53657 -11.37309 -10.93184 -10.83477 -10.50950 -10.44370 -10.08154 -9.48130 -9.29103 -8.80490 -8.39170 -8.32196 -8.11777 -5.95624 -3.96091 1.69388 1.73725 3.38239 3.41865 3.45489 4.09059 4.50321 4.54074 4.97188 5.13521 5.25749 5.35672 5.37740 5.42508 5.54764 5.70680 5.75123 5.97448 6.03406 6.13659 6.30325 6.37211 6.38051 6.62308 6.77966 6.85037 7.10139 7.35797 7.49304 7.68495 8.01218 8.05826 8.44704 9.07724 9.66141 11.15895 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.038412 B = 0.008331 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.759126 B = 3360.100947 C = 3951.517778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.058 0.942 9 C 0.034 3.966 10 C 0.130 3.870 11 H 0.061 0.939 12 O -0.353 6.353 13 C 0.053 3.947 14 C -0.112 4.112 15 C -0.083 4.083 16 C -0.126 4.126 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.104 4.104 20 C -0.096 4.096 21 H 0.261 0.739 22 H 0.026 0.974 23 H 0.036 0.964 24 H 0.090 0.910 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.179 -13.197 -0.080 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.077 0.923 9 C -0.003 4.003 10 C 0.073 3.927 11 H 0.078 0.922 12 O -0.271 6.271 13 C -0.025 4.025 14 C -0.149 4.149 15 C -0.083 4.083 16 C -0.144 4.144 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.122 4.122 20 C -0.096 4.096 21 H 0.070 0.930 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.108 0.892 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.012 -12.913 0.060 13.260 hybrid contribution 0.316 0.567 -0.128 0.662 sum 3.329 -12.346 -0.068 12.787 Atomic orbital electron populations 1.69952 1.06008 1.26700 1.51124 1.24997 0.94849 0.99209 0.95471 0.86619 0.79523 0.83010 0.78618 1.20308 1.21384 1.20214 1.21115 0.93200 0.90451 1.50032 0.92337 1.19248 0.92800 0.89976 0.98249 1.21375 0.92921 0.92137 0.86308 0.92184 1.88283 1.58189 1.39207 1.41415 1.22523 0.92757 0.86373 1.00822 1.21104 0.95883 0.99585 0.98352 1.19536 0.97867 0.93317 0.97593 1.20952 0.96938 0.97125 0.99367 1.20975 0.98142 0.98493 0.97267 1.21077 1.00031 0.93384 0.99980 1.21276 0.94765 0.97869 0.98254 1.20691 0.97051 0.96252 0.95652 0.92979 0.95528 0.94592 0.89177 0.93521 0.90125 0.90637 0.86700 0.86656 0.86355 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.70 8.86 -34.44 -0.30 -15.01 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.03 0.90 4.37 -27.89 -0.12 0.77 16 10 C 0.13 2.88 2.67 -27.91 -0.07 2.81 16 11 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 12 O -0.35 -7.76 10.16 -35.23 -0.36 -8.12 16 13 C 0.05 0.86 6.85 37.14 0.25 1.11 16 14 C -0.11 -1.64 6.00 -27.88 -0.17 -1.81 16 15 C -0.08 -1.41 5.78 -104.59 -0.60 -2.02 16 16 C -0.13 -1.85 9.67 -39.51 -0.38 -2.23 16 17 C -0.13 -1.85 10.05 -39.64 -0.40 -2.25 16 18 C -0.13 -1.95 10.05 -39.64 -0.40 -2.35 16 19 C -0.10 -1.89 9.08 -39.50 -0.36 -2.25 16 20 C -0.10 -1.87 5.46 -104.62 -0.57 -2.45 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.96 6.33 -51.93 -0.33 0.63 16 24 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 28 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.13 2.44 6.46 -52.49 -0.34 2.10 16 LS Contribution 260.40 15.07 3.92 3.92 Total: -1.00 -31.48 260.40 -7.95 -39.44 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -4.01 Total: -1.70 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -3.22 Total: -24.16 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.44 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.36 Total: -8.12 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.48 -7.95 -39.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034247016.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.520 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds