Wall clock time and date at job start Mon Mar 30 2020 02:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.33839 * 304.67474 * 10 9 7 12 12 O 1.42731 * 109.33679 * 64.18510 * 10 9 7 13 13 C 1.43208 * 113.13649 * 171.94528 * 12 10 9 14 14 C 1.52973 * 108.46741 * 289.29853 * 13 12 10 15 15 C 1.50733 * 109.75300 * 49.23645 * 14 13 12 16 16 C 1.38602 * 118.76143 * 163.13017 * 15 14 13 17 17 C 1.38070 * 120.27773 * 179.75846 * 16 15 14 18 18 C 1.38258 * 119.86246 * 359.97438 * 17 16 15 19 19 C 1.38056 * 119.89529 * 0.09306 * 18 17 16 20 20 C 1.37906 * 121.35417 * 343.03685 * 15 14 13 21 21 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 22 22 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 23 23 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 24 24 H 1.09003 * 109.63571 * 169.60625 * 13 12 10 25 25 H 1.09001 * 109.63524 * 48.99419 * 13 12 10 26 26 H 1.09000 * 109.42586 * 289.14463 * 14 13 12 27 27 H 1.09008 * 109.42238 * 169.32129 * 14 13 12 28 28 H 1.08001 * 119.85932 * 359.72794 * 16 15 14 29 29 H 1.07995 * 120.07127 * 180.02562 * 17 16 15 30 30 H 1.07999 * 120.05343 * 180.09445 * 18 17 16 31 31 H 1.07997 * 119.84835 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 1 2.9246 -3.5599 -0.8297 12 8 2.9981 -3.6349 1.2289 13 6 3.8253 -4.7908 1.4036 14 6 2.9240 -5.9920 1.6953 15 6 1.8118 -6.0528 0.6798 16 6 1.1010 -7.2343 0.5392 17 6 0.0727 -7.3232 -0.3779 18 6 -0.2497 -6.2288 -1.1590 19 6 0.4588 -5.0520 -1.0205 20 6 1.4930 -4.9620 -0.1015 21 1 -0.4850 0.8401 -0.0041 22 1 0.6241 -2.5528 0.9015 23 1 0.6247 -2.5609 -0.8785 24 1 4.5054 -4.6315 2.2404 25 1 4.3962 -4.9737 0.4933 26 1 2.4983 -5.8918 2.6937 27 1 3.5127 -6.9079 1.6434 28 1 1.3528 -8.0892 1.1492 29 1 -0.4792 -8.2453 -0.4845 30 1 -1.0544 -6.2944 -1.8762 31 1 0.2066 -4.1978 -1.6312 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034247016.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:03 Heat of formation + Delta-G solvation = -51.972912 kcal Electronic energy + Delta-G solvation = -14424.976884 eV Core-core repulsion = 12055.825788 eV Total energy + Delta-G solvation = -2369.151096 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.20704 -38.38922 -35.63476 -33.99891 -32.94372 -30.84550 -29.46918 -26.41446 -24.68993 -24.08255 -22.12514 -20.89565 -18.69030 -17.82548 -17.16291 -16.72637 -16.43648 -16.07193 -15.23101 -15.00891 -14.51852 -14.21429 -14.07923 -13.61275 -13.45459 -13.20937 -12.75900 -12.69945 -12.50896 -12.30857 -12.07568 -11.49844 -11.37785 -11.30182 -10.58022 -10.39321 -9.64509 -9.46350 -8.19784 -6.29410 0.43639 0.47968 1.38907 1.43174 1.50992 2.41538 2.82878 3.01437 3.18485 3.79217 3.82354 3.97739 4.15600 4.27101 4.35043 4.43191 4.51472 4.61628 4.71684 4.84360 4.89990 5.01273 5.10779 5.23450 5.36273 5.46982 5.57485 5.63185 5.73661 5.78036 6.14104 6.18501 6.48799 6.82249 7.37611 8.92022 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.038412 B = 0.008331 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.759126 B = 3360.100947 C = 3951.517778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.056 0.944 9 C 0.043 3.957 10 C 0.142 3.858 11 H 0.051 0.949 12 O -0.389 6.389 13 C 0.043 3.957 14 C -0.107 4.107 15 C -0.095 4.095 16 C -0.121 4.121 17 C -0.120 4.120 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.130 4.130 21 H 0.264 0.736 22 H -0.013 1.013 23 H 0.020 0.980 24 H 0.115 0.885 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.143 0.857 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.979 -15.197 0.401 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.006 3.994 10 C 0.084 3.916 11 H 0.069 0.931 12 O -0.309 6.309 13 C -0.034 4.034 14 C -0.144 4.144 15 C -0.095 4.095 16 C -0.139 4.139 17 C -0.138 4.138 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.131 4.131 21 H 0.073 0.927 22 H 0.005 0.995 23 H 0.039 0.961 24 H 0.133 0.867 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.171 0.829 29 H 0.174 0.826 30 H 0.160 0.840 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.825 -14.932 0.537 15.423 hybrid contribution 0.043 1.091 -0.263 1.123 sum 3.868 -13.841 0.274 14.374 Atomic orbital electron populations 1.70087 1.07685 1.27854 1.51727 1.25955 0.95816 1.03246 0.94746 0.85478 0.78288 0.78013 0.79127 1.18942 1.20503 1.19585 1.21477 0.93330 0.91912 1.50309 0.92560 1.19011 0.93154 0.91713 0.95492 1.20884 0.92109 0.92237 0.86327 0.93143 1.88180 1.59188 1.42458 1.41034 1.22896 0.92847 0.85386 1.02241 1.21146 0.95308 1.00339 0.97614 1.19883 0.98920 0.93309 0.97406 1.21394 0.96064 0.97133 0.99300 1.21478 0.97521 0.99212 0.95591 1.21377 1.00015 0.92638 1.00647 1.21267 0.95910 0.98788 0.98776 1.20534 0.98363 0.96027 0.98151 0.92713 0.99490 0.96148 0.86658 0.92747 0.89846 0.86622 0.82861 0.82599 0.83963 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 46.03 29.54 68.60 2.03 48.06 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.53 -32.10 8.86 25.60 0.23 -31.87 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.44 4.37 29.85 0.13 2.57 16 10 C 0.14 6.64 2.67 29.83 0.08 6.72 16 11 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 12 O -0.39 -17.63 10.16 -148.98 -1.51 -19.14 16 13 C 0.04 1.34 6.85 71.97 0.49 1.83 16 14 C -0.11 -2.87 6.00 29.85 0.18 -2.69 16 15 C -0.10 -3.08 5.78 -19.85 -0.11 -3.19 16 16 C -0.12 -3.10 9.67 22.32 0.22 -2.88 16 17 C -0.12 -2.95 10.05 22.23 0.22 -2.73 16 18 C -0.13 -3.79 10.05 22.23 0.22 -3.57 16 19 C -0.13 -4.90 9.08 22.32 0.20 -4.69 16 20 C -0.13 -5.22 5.46 -19.86 -0.11 -5.33 16 21 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 22 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 23 H 0.02 1.19 6.33 -2.39 -0.02 1.18 16 24 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 25 H 0.05 1.60 8.07 -2.39 -0.02 1.58 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 29 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 31 H 0.11 4.44 6.46 -2.91 -0.02 4.42 16 Total: -1.00 -71.45 260.40 4.12 -67.33 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.11 Total: 7.30 kcal Atomic # 6 Polarization: -47.61 SS G_CDS: 2.21 Total: -45.40 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.28 Total: -58.16 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -1.51 Total: -19.14 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -71.45 4.12 -67.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034247016.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.359 kcal (2) G-P(sol) polarization free energy of solvation -71.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds