Wall clock time and date at job start Mon Mar 30 2020 02:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99805 * 2 1 4 4 H 1.48505 * 109.46781 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47331 * 300.00142 * 3 2 1 6 6 H 1.48491 * 109.47267 * 60.00573 * 3 2 1 7 7 C 1.37876 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99866 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00050 * 359.97438 * 7 2 1 10 10 O 1.42895 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46830 * 180.02562 * 11 10 9 13 13 C 1.32564 * 120.00027 * 135.00270 * 12 11 10 14 14 C 1.47815 * 120.00319 * 179.97438 * 13 12 11 15 15 C 1.39531 * 120.14192 * 179.97438 * 14 13 12 16 16 C 1.37972 * 119.85483 * 179.97438 * 15 14 13 17 17 C 1.38345 * 120.14331 * 359.97438 * 16 15 14 18 18 C 1.38345 * 120.28513 * 0.02562 * 17 16 15 19 19 C 1.37975 * 120.14228 * 0.02562 * 18 17 16 20 20 H 0.97006 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46956 * 60.00124 * 9 7 2 22 22 H 1.09000 * 109.46856 * 300.00366 * 9 7 2 23 23 H 1.08995 * 109.47205 * 60.00003 * 11 10 9 24 24 H 1.08997 * 109.47076 * 299.99601 * 11 10 9 25 25 H 1.08005 * 120.00327 * 314.99421 * 12 11 10 26 26 H 1.08005 * 120.00176 * 359.97438 * 13 12 11 27 27 H 1.08000 * 120.07490 * 359.96214 * 15 14 13 28 28 H 1.08004 * 119.93207 * 180.02562 * 16 15 14 29 29 H 1.07997 * 119.86073 * 179.74273 * 17 16 15 30 30 H 1.08003 * 119.92854 * 179.97438 * 18 17 16 31 31 H 1.07998 * 120.07404 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5852 -0.0017 11 6 1.5651 -4.8753 -0.0024 12 6 2.6318 -5.9399 -0.0030 13 6 2.5276 -6.9831 0.8081 14 6 3.5736 -8.0276 0.8072 15 6 3.4671 -9.1266 1.6602 16 6 4.4466 -10.0983 1.6540 17 6 5.5323 -9.9849 0.8042 18 6 5.6438 -8.8976 -0.0440 19 6 4.6717 -7.9185 -0.0468 20 1 -0.4851 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 0.9446 -4.9817 -0.8922 24 1 0.9454 -4.9831 0.8878 25 1 3.4812 -5.8529 -0.6645 26 1 1.6784 -7.0701 1.4698 27 1 2.6199 -9.2165 2.3239 28 1 4.3652 -10.9498 2.3135 29 1 6.2985 -10.7460 0.8061 30 1 6.4941 -8.8147 -0.7048 31 1 4.7596 -7.0705 -0.7097 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034958444.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:19 Heat of formation + Delta-G solvation = -16.695763 kcal Electronic energy + Delta-G solvation = -13101.754196 eV Core-core repulsion = 10734.132832 eV Total energy + Delta-G solvation = -2367.621364 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.20711 -36.93379 -34.35471 -32.68261 -31.02277 -30.18984 -27.38425 -25.18524 -22.90003 -22.34176 -21.78388 -19.21863 -17.17591 -16.43890 -15.59959 -15.31593 -14.99731 -14.55617 -14.37690 -13.84888 -13.38960 -13.17308 -12.98474 -12.41461 -11.85382 -11.61459 -11.21801 -11.00917 -10.91489 -10.78441 -10.56722 -10.12411 -10.05608 -9.13090 -9.01064 -8.90069 -8.25305 -7.99417 -6.12827 -4.14730 0.93759 1.35298 2.57314 3.28645 3.35056 3.41797 3.90083 4.33922 4.62551 4.79018 4.89292 5.02514 5.16877 5.23783 5.38330 5.42339 5.48613 5.73043 5.90190 5.92185 6.01163 6.07525 6.31940 6.41710 6.45064 6.77999 6.90093 6.96459 7.06371 7.39187 7.77744 8.12042 8.53171 8.98520 9.50275 10.98746 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.063288 B = 0.004097 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.316599 B = 6832.876220 C = 7101.718388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.193 3.807 10 O -0.393 6.393 11 C 0.086 3.914 12 C -0.108 4.108 13 C -0.141 4.141 14 C -0.040 4.040 15 C -0.116 4.116 16 C -0.121 4.121 17 C -0.131 4.131 18 C -0.118 4.118 19 C -0.119 4.119 20 H 0.264 0.736 21 H 0.007 0.993 22 H 0.007 0.993 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.826 -17.968 1.316 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.313 6.313 11 C 0.009 3.991 12 C -0.125 4.125 13 C -0.159 4.159 14 C -0.040 4.040 15 C -0.134 4.134 16 C -0.139 4.139 17 C -0.149 4.149 18 C -0.136 4.136 19 C -0.136 4.136 20 H 0.073 0.927 21 H 0.025 0.975 22 H 0.025 0.975 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.136 0.864 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.869 -17.809 1.317 19.134 hybrid contribution -0.007 0.847 0.014 0.847 sum 6.863 -16.962 1.332 18.346 Atomic orbital electron populations 1.69970 1.06123 1.27116 1.50561 1.24957 0.94995 0.99483 0.95085 0.86268 0.80034 0.82482 0.77643 1.19441 1.20805 1.20799 1.21101 0.94156 0.89291 1.50831 0.91428 1.20251 0.88790 0.83476 0.95554 1.87886 1.35544 1.12626 1.95245 1.21271 0.93238 0.84849 0.99790 1.23388 0.98795 0.93437 0.96926 1.21540 0.98470 0.95071 1.00841 1.19110 0.94551 0.94485 0.95905 1.21263 0.99239 0.93892 0.98971 1.21060 0.94618 0.98962 0.99223 1.21161 0.98334 0.98378 0.96986 1.21088 0.98890 0.94396 0.99180 1.21416 0.93936 0.99237 0.99057 0.92662 0.97535 0.97535 0.92974 0.93631 0.86410 0.86287 0.85925 0.86199 0.86365 0.86078 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.90 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.34 9.43 -34.44 -0.32 -15.67 16 8 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 9 C 0.19 5.37 5.69 36.01 0.20 5.57 16 10 O -0.39 -9.69 10.31 -35.23 -0.36 -10.06 16 11 C 0.09 1.62 6.36 36.01 0.23 1.85 16 12 C -0.11 -1.71 9.31 -36.21 -0.34 -2.05 16 13 C -0.14 -1.98 9.51 -37.57 -0.36 -2.33 16 14 C -0.04 -0.53 5.87 -105.01 -0.62 -1.15 16 15 C -0.12 -1.32 9.79 -39.20 -0.38 -1.70 16 16 C -0.12 -1.22 10.03 -39.64 -0.40 -1.62 16 17 C -0.13 -1.30 10.04 -39.50 -0.40 -1.70 16 18 C -0.12 -1.27 10.03 -39.64 -0.40 -1.67 16 19 C -0.12 -1.48 9.40 -39.19 -0.37 -1.85 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 22 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 25 H 0.12 1.80 6.04 -52.48 -0.32 1.48 16 26 H 0.12 1.51 7.92 -52.48 -0.42 1.09 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.13 1.52 6.17 -52.49 -0.32 1.19 16 LS Contribution 276.16 15.07 4.16 4.16 Total: -1.00 -31.65 276.16 -7.70 -39.35 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -3.97 Total: -3.31 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: -3.24 Total: -20.79 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.23 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.36 Total: -10.06 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.65 -7.70 -39.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034958444.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.650 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds