Wall clock time and date at job start Mon Mar 30 2020 03:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47531 * 2 1 4 4 C 1.38402 * 119.82419 * 89.99853 * 3 2 1 5 5 C 1.37884 * 120.17081 * 180.02562 * 4 3 2 6 6 C 1.39850 * 119.82381 * 359.97438 * 5 4 3 7 7 C 1.47166 * 120.16746 * 179.97438 * 6 5 4 8 8 O 1.21254 * 120.00434 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99927 * 180.02562 * 7 6 5 10 10 C 1.50698 * 109.47294 * 180.02562 * 9 7 6 11 11 H 1.08005 * 119.99819 * 359.97438 * 10 9 7 12 12 C 1.37875 * 120.00046 * 180.02562 * 10 9 7 13 13 N 1.31518 * 119.99944 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47548 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47233 * 119.99722 * 14 12 10 17 17 H 1.48500 * 109.46790 * 239.99650 * 14 12 10 18 18 C 1.39851 * 119.65869 * 0.25300 * 6 5 4 19 19 C 1.37882 * 119.82183 * 359.51662 * 18 6 5 20 20 H 1.08995 * 109.47687 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47477 * 300.00220 * 1 2 3 22 22 H 1.09009 * 109.46888 * 59.99885 * 1 2 3 23 23 H 1.09008 * 109.47009 * 239.99634 * 2 1 3 24 24 H 1.09000 * 109.47146 * 120.00137 * 2 1 3 25 25 H 1.07999 * 119.91107 * 0.02562 * 4 3 2 26 26 H 1.08007 * 120.08622 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.46953 * 299.99616 * 9 7 6 28 28 H 1.09000 * 109.47318 * 59.99214 * 9 7 6 29 29 H 0.96997 * 119.99752 * 180.02562 * 13 12 10 30 30 H 1.08002 * 120.08622 * 179.72514 * 18 6 5 31 31 H 1.08001 * 119.91359 * 180.21051 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2618 2.0698 1.2007 5 6 2.7210 3.3699 1.2091 6 6 2.9554 4.0325 0.0000 7 6 3.4450 5.4203 0.0001 8 8 3.6458 5.9924 1.0502 9 6 3.6957 6.1310 -1.3050 10 6 4.1892 7.5280 -1.0297 11 1 4.3089 7.8675 -0.0114 12 6 4.4869 8.3731 -2.0776 13 7 4.3407 7.9598 -3.3176 14 14 5.0979 10.1050 -1.7362 15 1 5.1746 10.3228 -0.2693 16 1 6.4457 10.2813 -2.3344 17 1 4.1587 11.0879 -2.3337 18 6 2.7165 3.3714 -1.2091 19 6 2.2619 2.0698 -1.2007 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.0807 1.5565 2.1335 26 1 2.8992 3.8751 2.1469 27 1 4.4475 5.5866 -1.8766 28 1 2.7689 6.1786 -1.8767 29 1 4.5505 8.5542 -4.0548 30 1 2.8910 3.8781 -2.1468 31 1 2.0802 1.5567 -2.1335 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036275865.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:43 Heat of formation + Delta-G solvation = -52.986961 kcal Electronic energy + Delta-G solvation = -13680.626927 eV Core-core repulsion = 11311.431859 eV Total energy + Delta-G solvation = -2369.195069 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91359 -39.30338 -35.18871 -34.97315 -32.23819 -31.35470 -30.09643 -26.44730 -24.81625 -23.42333 -22.35235 -20.54058 -18.67717 -17.55776 -16.94669 -16.34834 -16.19322 -15.81165 -15.28568 -14.99084 -14.54703 -14.32303 -14.15924 -14.01817 -13.40780 -13.20747 -12.83524 -12.67949 -12.57180 -12.23183 -12.06158 -11.90881 -11.66918 -11.41414 -10.65653 -10.34011 -9.93019 -9.66466 -8.27727 -6.36604 -0.23879 0.45073 1.37398 1.37794 1.52852 1.59035 2.38391 2.86672 3.07020 3.35734 3.83687 3.89194 4.07050 4.28324 4.45769 4.55269 4.57960 4.69141 4.71213 5.01833 5.03659 5.09775 5.13748 5.17911 5.23699 5.39951 5.45022 5.50974 5.63676 5.69348 5.99808 6.09625 6.73690 6.84029 7.32559 8.84505 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.062722 B = 0.005673 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.304657 B = 4934.275925 C = 5276.368727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.053 4.053 4 C -0.131 4.131 5 C -0.077 4.077 6 C -0.193 4.193 7 C 0.393 3.607 8 O -0.500 6.500 9 C -0.018 4.018 10 C -0.547 4.547 11 H 0.054 0.946 12 C 0.011 3.989 13 N -0.923 5.923 14 Si 0.964 3.036 15 H -0.274 1.274 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.074 4.074 19 C -0.131 4.131 20 H 0.076 0.924 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.153 0.847 26 H 0.122 0.878 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.268 0.732 30 H 0.130 0.870 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 -17.117 3.966 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.053 4.053 4 C -0.149 4.149 5 C -0.095 4.095 6 C -0.194 4.194 7 C 0.274 3.726 8 O -0.379 6.379 9 C -0.055 4.055 10 C -0.585 4.585 11 H 0.072 0.928 12 C -0.188 4.188 13 N -0.563 5.563 14 Si 0.789 3.211 15 H -0.199 1.199 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.092 4.092 19 C -0.149 4.149 20 H 0.095 0.905 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.171 0.829 26 H 0.140 0.860 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.473 -16.769 4.326 18.488 hybrid contribution 0.466 1.356 -0.118 1.439 sum -6.007 -15.413 4.207 17.069 Atomic orbital electron populations 1.21752 0.93933 1.02734 1.01967 1.20680 0.96637 0.90271 1.04517 1.20556 0.94802 0.97489 0.92429 1.21255 1.00626 0.93610 0.99371 1.21497 0.95739 0.95366 0.96944 1.20734 1.06942 0.95775 0.95904 1.23373 0.70986 0.86779 0.91447 1.90316 1.42554 1.68797 1.36206 1.19413 0.98331 0.95611 0.92150 1.21472 1.45015 0.98657 0.93377 0.92768 1.25815 0.95359 1.02971 0.94648 1.70040 1.49367 1.37986 0.98918 0.85407 0.78436 0.79048 0.78226 1.19918 1.19592 1.19612 1.21647 0.95167 0.95349 0.97014 1.21316 1.00408 0.93761 0.99386 0.90534 0.92966 0.92980 0.89375 0.89370 0.82904 0.86020 0.93624 0.93630 0.92315 0.85249 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.89 71.98 0.71 -1.19 16 2 C -0.08 -1.18 6.05 29.85 0.18 -1.00 16 3 C -0.05 -1.15 5.14 -19.79 -0.10 -1.25 16 4 C -0.13 -3.20 9.68 22.22 0.22 -2.98 16 5 C -0.08 -2.54 9.60 22.58 0.22 -2.32 16 6 C -0.19 -7.45 5.87 -20.15 -0.12 -7.57 16 7 C 0.39 19.21 7.11 28.03 0.20 19.41 16 8 O -0.50 -27.06 15.45 -2.95 -0.05 -27.11 16 9 C -0.02 -0.99 4.07 29.10 0.12 -0.87 16 10 C -0.55 -33.24 8.92 25.60 0.23 -33.01 16 11 H 0.05 3.43 6.75 -2.91 -0.02 3.41 16 12 C 0.01 0.63 5.46 84.65 0.46 1.10 16 13 N -0.92 -55.04 13.29 21.45 0.28 -54.76 16 14 Si 0.96 45.97 29.54 68.60 2.03 48.00 16 15 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 C -0.07 -2.42 9.47 22.58 0.21 -2.20 16 19 C -0.13 -3.24 9.68 22.22 0.22 -3.03 16 20 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 21 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 22 H 0.05 0.74 8.14 -2.38 -0.02 0.73 16 23 H 0.09 1.03 8.08 -2.38 -0.02 1.01 16 24 H 0.09 1.00 8.08 -2.39 -0.02 0.99 16 25 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 26 H 0.12 4.09 7.65 -2.91 -0.02 4.06 16 27 H 0.05 2.50 8.09 -2.39 -0.02 2.48 16 28 H 0.05 2.50 8.08 -2.39 -0.02 2.48 16 29 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.13 4.37 7.05 -2.91 -0.02 4.35 16 31 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -69.80 273.19 5.91 -63.88 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.11 Total: 4.90 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 2.54 Total: -34.92 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.28 Total: -54.76 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -69.80 5.91 -63.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036275865.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.896 kcal (2) G-P(sol) polarization free energy of solvation -69.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds