Wall clock time and date at job start Mon Mar 30 2020 02:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86798 * 119.99982 * 2 1 4 4 H 1.48495 * 109.47014 * 274.64993 * 3 2 1 5 5 H 1.48497 * 109.47355 * 34.65517 * 3 2 1 6 6 H 1.48505 * 109.46923 * 154.65526 * 3 2 1 7 7 C 1.39891 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00043 * 162.16462 * 7 2 1 9 9 C 1.41211 * 120.00228 * 342.15691 * 7 2 1 10 10 C 1.40834 * 120.18017 * 155.14532 * 9 7 2 11 11 C 1.36435 * 119.81515 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18246 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.82121 * 179.97438 * 12 11 10 14 14 C 1.42902 * 117.00632 * 179.97438 * 13 12 11 15 15 C 1.52992 * 109.47344 * 179.97438 * 14 13 12 16 16 C 1.53006 * 117.50037 * 243.74724 * 15 14 13 17 17 C 1.52999 * 117.50075 * 175.08527 * 15 14 13 18 18 C 1.39311 * 120.36926 * 0.27170 * 12 11 10 19 19 C 1.36447 * 120.17846 * 359.44019 * 18 12 11 20 20 H 0.97003 * 119.99725 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.09084 * 0.04891 * 10 9 7 22 22 H 1.08000 * 119.91299 * 179.97438 * 11 10 9 23 23 H 1.08998 * 109.46405 * 299.99967 * 14 13 12 24 24 H 1.09000 * 109.46591 * 59.99473 * 14 13 12 25 25 H 1.09007 * 115.55015 * 29.41793 * 15 14 13 26 26 H 1.08996 * 117.49643 * 0.02562 * 16 15 14 27 27 H 1.09003 * 117.49606 * 145.01860 * 16 15 14 28 28 H 1.09004 * 117.50279 * 214.98148 * 17 15 14 29 29 H 1.09002 * 117.49919 * 0.02562 * 17 15 14 30 30 H 1.07998 * 119.91152 * 179.70513 * 18 12 11 31 31 H 1.08001 * 120.09266 * 180.26858 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1031 -1.3954 5 1 1.4930 2.6223 0.7961 6 1 3.5862 1.4137 0.5993 7 6 2.0083 -1.2115 0.0005 8 1 3.0494 -1.2342 -0.2859 9 6 1.3531 -2.4049 0.3758 10 6 1.8225 -3.6475 -0.0921 11 6 1.1835 -4.7958 0.2747 12 6 0.0694 -4.7414 1.1092 13 8 -0.5608 -5.8879 1.4690 14 6 -1.6965 -5.7623 2.3271 15 6 -2.2699 -7.1500 2.6207 16 6 -3.6862 -7.4486 2.1247 17 6 -3.4261 -7.2400 3.6187 18 6 -0.4052 -3.5159 1.5715 19 6 0.2259 -2.3587 1.2188 20 1 -0.4850 0.8401 -0.0004 21 1 2.6861 -3.6913 -0.7392 22 1 1.5419 -5.7496 -0.0836 23 1 -1.3953 -5.2881 3.2612 24 1 -2.4556 -5.1518 1.8380 25 1 -1.5498 -7.9682 2.6096 26 1 -4.2092 -6.6566 1.5888 27 1 -3.8979 -8.4634 1.7876 28 1 -3.4669 -8.1176 4.2639 29 1 -3.7785 -6.3105 4.0658 30 1 -1.2723 -3.4820 2.2143 31 1 -0.1405 -1.4098 1.5815 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036765352.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:11 Heat of formation + Delta-G solvation = -16.561657 kcal Electronic energy + Delta-G solvation = -13789.692261 eV Core-core repulsion = 11422.076712 eV Total energy + Delta-G solvation = -2367.615549 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59436 -38.67618 -37.42582 -35.19566 -31.57222 -31.17052 -28.55833 -26.48258 -23.27897 -23.27477 -22.49253 -21.28421 -19.28021 -18.67856 -17.33620 -16.79316 -16.38329 -15.82843 -15.54275 -15.09902 -14.61736 -14.20159 -13.84397 -13.57386 -13.37001 -12.92650 -12.74744 -12.42658 -12.34056 -12.21009 -11.80691 -11.66369 -11.40642 -11.21550 -10.99820 -10.74500 -9.58654 -8.92386 -8.61045 -6.23686 0.92320 1.02808 1.39857 1.49654 1.56050 2.22901 2.46136 2.71612 2.93169 3.68875 3.84548 3.93163 4.08269 4.22563 4.32345 4.36156 4.52421 4.62012 4.75958 4.88453 4.98694 5.00544 5.13969 5.21429 5.23563 5.35677 5.51722 5.65457 5.96080 6.05169 6.22223 6.55257 6.78389 6.94161 7.08880 8.36274 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.057317 B = 0.005802 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.396632 B = 4824.446154 C = 5170.793202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.077 0.923 9 C 0.055 3.945 10 C -0.205 4.205 11 C -0.121 4.121 12 C -0.004 4.004 13 O -0.335 6.335 14 C 0.092 3.908 15 C -0.173 4.173 16 C -0.176 4.176 17 C -0.154 4.154 18 C -0.177 4.177 19 C -0.156 4.156 20 H 0.287 0.713 21 H 0.112 0.888 22 H 0.121 0.879 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.111 0.889 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 -7.038 5.019 10.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.530 4.530 8 H 0.095 0.905 9 C 0.053 3.947 10 C -0.224 4.224 11 C -0.140 4.140 12 C -0.048 4.048 13 O -0.251 6.251 14 C 0.017 3.983 15 C -0.191 4.191 16 C -0.213 4.213 17 C -0.191 4.191 18 C -0.196 4.196 19 C -0.175 4.175 20 H 0.098 0.902 21 H 0.130 0.870 22 H 0.139 0.861 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.129 0.871 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.251 -7.083 4.953 10.113 hybrid contribution 0.177 1.014 -0.101 1.034 sum -5.075 -6.070 4.852 9.281 Atomic orbital electron populations 1.69900 1.09036 1.30446 1.36602 1.26747 0.95468 1.04508 0.91242 0.85190 0.79179 0.75969 0.79339 1.18763 1.19114 1.18228 1.19736 0.98411 0.92401 1.42415 0.90459 1.17964 0.92729 0.93285 0.90767 1.20820 1.03757 0.92184 1.05665 1.19916 0.95658 0.98348 1.00068 1.18737 0.97381 0.84503 1.04190 1.85783 1.43726 1.29724 1.65869 1.22215 0.86491 0.96879 0.92702 1.22084 0.92564 0.96737 1.07703 1.23189 0.96833 1.03738 0.97491 1.23106 0.99085 1.04503 0.92395 1.20812 1.01782 0.92527 1.04431 1.20916 0.99347 0.96703 1.00572 0.90227 0.86999 0.86106 0.92615 0.93252 0.87059 0.88951 0.87077 0.86316 0.88140 0.86707 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.29 10.97 21.82 0.24 -44.05 16 2 C 0.03 1.74 5.13 85.23 0.44 2.18 16 3 Si 0.98 38.55 29.60 68.60 2.03 40.58 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.50 -27.42 9.04 23.40 0.21 -27.21 16 8 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 9 C 0.05 3.04 5.57 -21.28 -0.12 2.92 16 10 C -0.20 -10.39 9.74 22.48 0.22 -10.17 16 11 C -0.12 -5.74 9.92 22.11 0.22 -5.52 16 12 C 0.00 -0.20 6.71 22.79 0.15 -0.05 16 13 O -0.33 -13.95 10.12 -89.96 -0.91 -14.87 16 14 C 0.09 3.05 5.01 71.98 0.36 3.42 16 15 C -0.17 -4.40 6.05 -10.79 -0.07 -4.47 16 16 C -0.18 -3.64 10.18 30.62 0.31 -3.33 16 17 C -0.15 -2.88 10.25 30.62 0.31 -2.57 16 18 C -0.18 -8.58 8.96 22.11 0.20 -8.38 16 19 C -0.16 -8.45 8.64 22.49 0.19 -8.25 16 20 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 21 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 22 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 23 H 0.06 1.80 7.66 -2.39 -0.02 1.78 16 24 H 0.05 1.64 7.36 -2.39 -0.02 1.62 16 25 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 26 H 0.09 1.98 8.03 -2.39 -0.02 1.96 16 27 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.12 4.93 6.27 -2.91 -0.02 4.91 16 31 H 0.11 5.97 6.18 -2.91 -0.02 5.96 16 Total: -1.00 -60.69 267.62 4.91 -55.78 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 1.11 Total: 23.99 kcal Atomic # 6 Polarization: -63.87 SS G_CDS: 2.44 Total: -61.44 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.24 Total: -44.05 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.91 Total: -14.87 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -60.69 4.91 -55.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036765352.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.217 kcal (2) G-P(sol) polarization free energy of solvation -60.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds