Wall clock time and date at job start Mon Mar 30 2020 03:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52997 * 109.47229 * 89.99423 * 6 5 4 8 8 C 1.50707 * 109.47230 * 180.02562 * 7 6 5 9 9 O 1.21429 * 119.99790 * 0.02562 * 8 7 6 10 10 C 1.41023 * 120.00011 * 180.02562 * 8 7 6 11 11 H 1.08004 * 120.00005 * 359.97438 * 10 8 7 12 12 C 1.40465 * 120.00158 * 180.02562 * 10 8 7 13 13 N 1.30521 * 119.99429 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 120.00117 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47282 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47102 * 119.99992 * 14 12 10 17 17 H 1.48500 * 109.47170 * 239.99907 * 14 12 10 18 18 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 19 19 C 1.38234 * 120.00033 * 0.49775 * 18 5 4 20 20 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 21 21 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 22 22 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 23 23 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 24 24 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 26 26 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 27 27 H 1.09004 * 109.47454 * 300.00132 * 7 6 5 28 28 H 1.09006 * 109.47180 * 60.00059 * 7 6 5 29 29 H 0.96998 * 119.99504 * 180.02562 * 13 12 10 30 30 H 1.07999 * 119.99934 * 180.25938 * 18 5 4 31 31 H 1.08001 * 120.00294 * 179.76453 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2941 -0.0027 1.4304 8 6 7.8012 -0.0021 1.4247 9 8 8.4043 0.0007 0.3708 10 6 8.5109 -0.0049 2.6433 11 1 7.9745 -0.0070 3.5807 12 6 9.9156 -0.0037 2.6380 13 7 10.5638 -0.0007 1.5052 14 14 10.8557 -0.0066 4.2522 15 1 9.8950 -0.0105 5.3845 16 1 11.7107 -1.2187 4.3249 17 1 11.7088 1.2063 4.3303 18 6 3.5805 -1.1972 0.0010 19 6 2.1982 -1.1972 0.0009 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 1.6582 2.1324 -0.0004 24 1 4.1205 2.1325 0.0001 25 1 6.1400 -0.8891 -0.5270 26 1 6.1401 0.8909 -0.5236 27 1 5.9328 0.8863 1.9473 28 1 5.9327 -0.8937 1.9440 29 1 11.5338 -0.0003 1.5015 30 1 4.1205 -2.1325 0.0013 31 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041203798.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:08 Heat of formation + Delta-G solvation = -61.742497 kcal Electronic energy + Delta-G solvation = -13609.501146 eV Core-core repulsion = 11239.926409 eV Total energy + Delta-G solvation = -2369.574737 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.40287 -38.95416 -35.40986 -34.64227 -31.96056 -31.78739 -29.43592 -27.37863 -24.46081 -23.56838 -21.72527 -20.88759 -18.43916 -17.31967 -16.67720 -16.57132 -15.93965 -15.23861 -15.23379 -15.11625 -14.50943 -14.25119 -13.71993 -13.46151 -13.28917 -13.09205 -12.96159 -12.66321 -12.38993 -12.26299 -11.98615 -11.95102 -11.74230 -11.62014 -10.99201 -9.80422 -9.61959 -9.26721 -8.28491 -7.10373 0.45525 0.52334 1.33072 1.37023 1.55330 2.18937 2.21237 2.86084 3.37610 3.87996 3.93879 4.13177 4.18801 4.29058 4.50668 4.60990 4.61860 4.64176 4.88255 4.89603 4.97780 5.02065 5.11521 5.19520 5.27913 5.28995 5.37065 5.56273 5.72313 5.83058 5.97509 6.17581 6.72043 6.81245 8.27434 8.51450 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.064250 B = 0.005153 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.691031 B = 5432.711814 C = 5553.316161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.122 4.122 4 C -0.129 4.129 5 C -0.094 4.094 6 C -0.053 4.053 7 C -0.136 4.136 8 C 0.335 3.665 9 O -0.594 6.594 10 C -0.568 4.568 11 H 0.084 0.916 12 C 0.025 3.975 13 N -0.791 5.791 14 Si 0.995 3.005 15 H -0.248 1.248 16 H -0.264 1.264 17 H -0.264 1.264 18 C -0.129 4.129 19 C -0.122 4.122 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.143 0.857 24 H 0.120 0.880 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.281 0.719 30 H 0.120 0.880 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.306 -0.006 1.054 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.102 4.102 3 C -0.140 4.140 4 C -0.147 4.147 5 C -0.094 4.094 6 C -0.091 4.091 7 C -0.174 4.174 8 C 0.233 3.767 9 O -0.487 6.487 10 C -0.599 4.599 11 H 0.102 0.898 12 C -0.193 4.193 13 N -0.421 5.421 14 Si 0.813 3.187 15 H -0.171 1.171 16 H -0.188 1.188 17 H -0.188 1.188 18 C -0.147 4.147 19 C -0.140 4.140 20 H 0.097 0.903 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.161 0.839 24 H 0.138 0.862 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -15.930 -0.004 0.426 15.936 hybrid contribution 0.914 0.000 0.451 1.019 sum -15.016 -0.005 0.876 15.042 Atomic orbital electron populations 1.20804 0.88809 1.03711 1.03108 1.20303 0.97764 0.92712 0.99465 1.21283 0.93288 0.98877 1.00532 1.21205 0.95167 0.97361 1.00983 1.20034 0.94858 0.94445 1.00032 1.20135 0.90724 1.01453 0.96776 1.21806 0.97164 1.02055 0.96413 1.20342 0.89561 0.77110 0.89645 1.90347 1.72109 1.50854 1.35424 1.21409 0.93157 1.49472 0.95900 0.89786 1.27273 0.99288 0.91011 1.01755 1.70100 1.09422 1.32403 1.30130 0.85024 0.78001 0.79012 0.76652 1.17069 1.18821 1.18813 1.21206 0.95167 0.97362 1.00980 1.21285 0.93289 0.98876 1.00530 0.90278 0.90578 0.90580 0.83879 0.86164 0.93068 0.93072 0.90818 0.90806 0.90862 0.86161 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.24 0.71 -0.89 16 2 C -0.10 -2.34 5.88 -19.86 -0.12 -2.46 16 3 C -0.12 -3.04 9.70 22.27 0.22 -2.82 16 4 C -0.13 -3.98 9.70 22.27 0.22 -3.77 16 5 C -0.09 -3.27 5.13 -19.87 -0.10 -3.37 16 6 C -0.05 -2.28 4.63 29.84 0.14 -2.14 16 7 C -0.14 -6.33 5.55 29.85 0.17 -6.16 16 8 C 0.34 19.75 6.90 26.37 0.18 19.93 16 9 O -0.59 -39.75 14.50 -3.49 -0.05 -39.80 16 10 C -0.57 -32.72 9.22 23.50 0.22 -32.50 16 11 H 0.08 4.41 7.85 -2.91 -0.02 4.38 16 12 C 0.03 1.41 5.50 85.43 0.47 1.88 16 13 N -0.79 -47.76 11.72 21.91 0.26 -47.50 16 14 Si 0.99 40.27 29.56 68.60 2.03 42.30 16 15 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 18 C -0.13 -3.98 9.70 22.27 0.22 -3.76 16 19 C -0.12 -3.04 9.70 22.27 0.22 -2.82 16 20 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 22 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 23 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 24 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 25 H 0.05 2.32 8.05 -2.39 -0.02 2.30 16 26 H 0.05 2.32 8.04 -2.39 -0.02 2.30 16 27 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 28 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 29 H 0.28 15.09 8.29 -92.71 -0.77 14.32 16 30 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -72.28 273.82 5.87 -66.41 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.10 Total: 17.48 kcal Atomic # 6 Polarization: -41.42 SS G_CDS: 2.53 Total: -38.88 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.26 Total: -47.50 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.05 Total: -39.80 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -72.28 5.87 -66.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041203798.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.668 kcal (2) G-P(sol) polarization free energy of solvation -72.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds