Wall clock time and date at job start Mon Mar 30 2020 03:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38233 * 119.99729 * 0.48568 * 5 4 3 7 7 C 1.50701 * 120.00070 * 179.76597 * 6 5 4 8 8 C 1.50698 * 109.47322 * 270.02023 * 7 6 5 9 9 O 1.21431 * 119.99838 * 0.02562 * 8 7 6 10 10 C 1.41022 * 120.00083 * 179.97438 * 8 7 6 11 11 H 1.08009 * 119.99835 * 0.02562 * 10 8 7 12 12 C 1.40461 * 120.00277 * 180.02562 * 10 8 7 13 13 N 1.30522 * 119.99873 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 120.00085 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47259 * 90.00244 * 14 12 10 16 16 H 1.48508 * 109.47069 * 209.99985 * 14 12 10 17 17 H 1.48504 * 109.47254 * 329.99863 * 14 12 10 18 18 C 1.38239 * 120.00062 * 359.79046 * 6 5 4 19 19 C 1.38230 * 119.99880 * 359.95582 * 18 6 5 20 20 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 25 25 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 26 26 H 1.07993 * 120.00327 * 180.25079 * 5 4 3 27 27 H 1.09002 * 109.47060 * 30.02215 * 7 6 5 28 28 H 1.09001 * 109.47380 * 150.02303 * 7 6 5 29 29 H 0.96993 * 120.00371 * 180.02562 * 13 12 10 30 30 H 1.08008 * 119.99983 * 179.97438 * 18 6 5 31 31 H 1.08007 * 119.99843 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9543 4.0272 0.0000 7 6 3.4567 5.4480 0.0001 8 6 4.9637 5.4480 0.0001 9 8 5.5708 4.3964 -0.0004 10 6 5.6688 6.6693 -0.0004 11 1 5.1287 7.6047 -0.0004 12 6 7.0734 6.6694 -0.0009 13 7 7.7260 5.5390 -0.0004 14 14 8.0073 8.2871 -0.0008 15 1 8.2554 8.7155 1.3993 16 1 9.3047 8.1098 -0.7014 17 1 7.2045 9.3222 -0.7003 18 6 2.7240 3.3755 1.1972 19 6 2.2628 2.0724 1.1971 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 2.0927 1.5598 -2.1325 26 1 2.9047 3.8844 -2.1324 27 1 3.0933 5.9619 -0.8899 28 1 3.0934 5.9618 0.8901 29 1 8.6960 5.5390 -0.0004 30 1 2.9041 3.8846 2.1326 31 1 2.0825 1.5633 2.1325 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041203871.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:19 Heat of formation + Delta-G solvation = -58.729117 kcal Electronic energy + Delta-G solvation = -13861.352897 eV Core-core repulsion = 11491.908830 eV Total energy + Delta-G solvation = -2369.444067 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.46113 -38.68649 -35.40385 -34.64151 -31.99363 -31.74125 -29.46703 -27.33412 -24.12594 -23.54636 -21.95671 -20.92044 -18.37626 -17.18939 -16.88076 -16.51699 -16.03462 -15.40113 -14.80566 -14.78627 -14.48147 -14.36850 -14.00494 -13.62279 -13.44346 -12.91659 -12.70239 -12.49355 -12.36008 -12.26402 -12.04325 -11.92838 -11.59255 -11.56888 -10.96742 -9.73337 -9.64700 -9.20090 -8.26199 -7.08724 0.56323 0.58818 1.35158 1.37386 1.54120 2.20970 2.21687 2.93225 3.38989 3.92158 3.96840 4.14375 4.21136 4.32680 4.56654 4.64745 4.65426 4.70909 4.76852 4.89679 4.93100 5.09733 5.11194 5.20101 5.27769 5.30907 5.43222 5.59997 5.76975 5.89070 5.97884 6.23468 6.73221 6.83098 8.29966 8.53349 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.073872 B = 0.005816 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.942648 B = 4813.045041 C = 4876.898684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 C -0.102 4.102 4 C -0.122 4.122 5 C -0.132 4.132 6 C -0.068 4.068 7 C -0.120 4.120 8 C 0.345 3.655 9 O -0.585 6.585 10 C -0.569 4.569 11 H 0.086 0.914 12 C 0.027 3.973 13 N -0.793 5.793 14 Si 0.994 3.006 15 H -0.259 1.259 16 H -0.269 1.269 17 H -0.248 1.248 18 C -0.132 4.132 19 C -0.122 4.122 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.139 0.861 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.280 0.720 30 H 0.113 0.887 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 -4.749 0.003 11.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.102 4.102 4 C -0.140 4.140 5 C -0.150 4.150 6 C -0.069 4.069 7 C -0.158 4.158 8 C 0.242 3.758 9 O -0.477 6.477 10 C -0.600 4.600 11 H 0.104 0.896 12 C -0.192 4.192 13 N -0.422 5.422 14 Si 0.812 3.188 15 H -0.183 1.183 16 H -0.194 1.194 17 H -0.171 1.171 18 C -0.150 4.150 19 C -0.140 4.140 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.157 0.843 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.429 -5.382 0.000 11.736 hybrid contribution 0.688 0.930 0.009 1.157 sum -9.741 -4.452 0.008 10.710 Atomic orbital electron populations 1.21714 0.93645 1.02493 1.01912 1.20542 0.96966 0.90666 1.03399 1.20160 0.99877 0.97574 0.92572 1.21190 1.00061 0.94041 0.98709 1.21110 1.00478 0.96139 0.97257 1.19848 0.96389 0.96516 0.94099 1.21092 0.98121 0.93531 1.03088 1.20152 0.88612 0.89699 0.77344 1.90377 1.71497 1.35670 1.50160 1.21361 0.93081 0.95790 1.49761 0.89567 1.27243 0.99218 1.01689 0.91031 1.70102 1.09242 1.30290 1.32550 0.85083 0.77332 0.76620 0.79738 1.18311 1.19382 1.17107 1.21113 1.00454 0.96162 0.97256 1.21188 1.00047 0.94056 0.98706 0.92921 0.92909 0.90663 0.90435 0.90437 0.84309 0.86852 0.89597 0.89584 0.90966 0.86845 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.89 71.98 0.71 -1.87 16 2 C -0.08 -1.76 6.06 29.85 0.18 -1.58 16 3 C -0.10 -3.18 5.13 -19.87 -0.10 -3.28 16 4 C -0.12 -4.13 9.70 22.27 0.22 -3.92 16 5 C -0.13 -5.31 9.70 22.27 0.22 -5.09 16 6 C -0.07 -3.01 4.37 -19.86 -0.09 -3.09 16 7 C -0.12 -5.56 5.70 29.10 0.17 -5.39 16 8 C 0.34 20.14 6.90 26.37 0.18 20.32 16 9 O -0.58 -39.15 14.56 -3.50 -0.05 -39.20 16 10 C -0.57 -32.34 9.22 23.49 0.22 -32.13 16 11 H 0.09 4.42 7.85 -2.91 -0.02 4.39 16 12 C 0.03 1.48 5.50 85.43 0.47 1.95 16 13 N -0.79 -47.85 11.72 21.91 0.26 -47.59 16 14 Si 0.99 40.07 29.56 68.60 2.03 42.09 16 15 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 16 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 17 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 18 C -0.13 -5.31 9.70 22.27 0.22 -5.09 16 19 C -0.12 -4.13 9.70 22.27 0.22 -3.91 16 20 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 24 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 25 H 0.14 3.82 8.06 -2.91 -0.02 3.79 16 26 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.09 3.62 8.09 -2.39 -0.02 3.60 16 28 H 0.09 3.62 8.09 -2.39 -0.02 3.60 16 29 H 0.28 15.14 8.29 -92.71 -0.77 14.37 16 30 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 31 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -72.80 273.90 5.94 -66.86 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 1.10 Total: 20.91 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 2.60 Total: -43.07 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.26 Total: -47.59 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.05 Total: -39.20 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.09 kcal Total: -72.80 5.94 -66.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041203871.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.132 kcal (2) G-P(sol) polarization free energy of solvation -72.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds