Wall clock time and date at job start Mon Mar 30 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38433 * 119.91201 * 2 1 4 4 C 1.38383 * 120.34740 * 179.97438 * 3 2 1 5 5 C 1.37902 * 120.17300 * 359.79355 * 4 3 2 6 6 C 1.50698 * 120.09053 * 180.23465 * 5 4 3 7 7 C 1.39836 * 119.82144 * 0.48144 * 5 4 3 8 8 C 1.47172 * 120.16835 * 179.77048 * 7 5 4 9 9 O 1.21254 * 119.99857 * 353.71713 * 8 7 5 10 10 C 1.50698 * 119.99977 * 173.71432 * 8 7 5 11 11 C 1.50704 * 109.47305 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99565 * 0.02562 * 11 10 8 13 13 C 1.37876 * 120.00174 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99775 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 119.99902 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47534 * 90.00450 * 15 13 11 17 17 H 1.48503 * 109.47186 * 210.00110 * 15 13 11 18 18 H 1.48500 * 109.47253 * 329.99944 * 15 13 11 19 19 C 1.37859 * 119.91792 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.46846 * 269.97383 * 1 2 3 21 21 H 1.09000 * 109.47285 * 29.97678 * 1 2 3 22 22 H 1.08998 * 109.46834 * 149.97522 * 1 2 3 23 23 H 1.07998 * 119.82388 * 0.02562 * 3 2 1 24 24 H 1.07997 * 119.90983 * 180.02562 * 4 3 2 25 25 H 1.08999 * 109.47162 * 263.61808 * 6 5 4 26 26 H 1.08997 * 109.47190 * 23.60888 * 6 5 4 27 27 H 1.09000 * 109.47720 * 143.61546 * 6 5 4 28 28 H 1.08996 * 109.47131 * 300.00298 * 10 8 7 29 29 H 1.09002 * 109.47094 * 59.99988 * 10 8 7 30 30 H 0.97001 * 119.99481 * 179.97438 * 14 13 11 31 31 H 1.08000 * 120.08599 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1999 0.0000 4 6 3.5811 1.2104 0.0005 5 6 4.2833 0.0236 0.0054 6 6 5.7902 0.0372 0.0113 7 6 3.5932 -1.1927 -0.0005 8 6 4.3349 -2.4638 -0.0005 9 8 5.5425 -2.4611 -0.1103 10 6 3.5936 -3.7687 0.1362 11 6 4.5768 -4.9105 0.1067 12 1 5.6328 -4.7111 0.0002 13 6 4.1282 -6.2096 0.2169 14 7 2.8422 -6.4523 0.3471 15 14 5.3469 -7.6247 0.1810 16 1 5.7969 -7.9257 1.5639 17 1 4.6941 -8.8257 -0.3994 18 1 6.5186 -7.2480 -0.6499 19 6 2.1946 -1.1949 -0.0005 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6530 2.1327 0.0004 24 1 4.1125 2.1506 0.0009 25 1 6.1585 -0.0755 -1.0084 26 1 6.1434 0.9828 0.4226 27 1 6.1587 -0.7857 0.6238 28 1 3.0504 -3.7808 1.0810 29 1 2.8895 -3.8747 -0.6891 30 1 2.5266 -7.3663 0.4242 31 1 1.6547 -2.1302 -0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041203884.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:44 Heat of formation + Delta-G solvation = -30.586588 kcal Electronic energy + Delta-G solvation = -14027.207648 eV Core-core repulsion = 11658.983932 eV Total energy + Delta-G solvation = -2368.223716 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.68119 -37.59360 -33.54605 -32.90451 -31.26811 -29.29815 -28.37554 -24.96971 -24.07936 -22.81072 -20.58463 -18.64142 -16.39014 -15.72173 -15.43304 -15.02109 -14.51830 -14.28473 -13.65881 -13.40847 -13.20446 -12.77934 -12.58804 -12.30748 -12.02825 -11.61787 -11.32202 -11.29363 -11.12837 -10.81335 -10.76891 -10.58956 -9.98096 -9.25401 -8.64366 -8.43065 -8.32060 -8.21939 -6.05805 -4.06216 1.17051 1.60407 3.19843 3.33954 3.39419 3.46039 4.16081 4.44616 4.91450 4.99062 5.01284 5.22776 5.32150 5.38744 5.53498 5.69591 5.72719 5.86353 5.98380 6.08029 6.18680 6.22911 6.49971 6.55487 6.59772 6.75905 6.99950 7.20999 7.24913 7.35147 7.93696 8.22790 8.68677 9.02973 9.58661 11.06355 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.036646 B = 0.007567 C = 0.006313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.880862 B = 3699.167655 C = 4434.224976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.113 4.113 3 C -0.100 4.100 4 C -0.138 4.138 5 C -0.042 4.042 6 C -0.119 4.119 7 C -0.157 4.157 8 C 0.389 3.611 9 O -0.456 6.456 10 C -0.020 4.020 11 C -0.516 4.516 12 H 0.073 0.927 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.899 3.101 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.272 1.272 19 C -0.066 4.066 20 H 0.068 0.932 21 H 0.062 0.938 22 H 0.068 0.932 23 H 0.119 0.881 24 H 0.121 0.879 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.261 0.739 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.408 13.754 -0.387 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.113 4.113 3 C -0.118 4.118 4 C -0.156 4.156 5 C -0.042 4.042 6 C -0.175 4.175 7 C -0.158 4.158 8 C 0.268 3.732 9 O -0.332 6.332 10 C -0.057 4.057 11 C -0.554 4.554 12 H 0.091 0.909 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.084 4.084 20 H 0.087 0.913 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.137 0.863 24 H 0.139 0.861 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.897 13.604 -0.431 13.916 hybrid contribution 0.323 -0.730 0.009 0.798 sum -2.575 12.874 -0.422 13.136 Atomic orbital electron populations 1.20753 0.91131 1.02632 1.02217 1.19852 0.96143 0.93058 1.02220 1.21119 0.94108 0.97309 0.99252 1.20945 0.94062 0.97340 1.03292 1.20267 0.96636 0.92119 0.95188 1.21049 0.90637 1.02484 1.03363 1.20991 0.94572 0.95613 1.04579 1.23333 0.89031 0.90424 0.70438 1.90306 1.16971 1.89445 1.36508 1.19527 0.97322 0.89462 0.99393 1.21195 0.94324 0.90046 1.49822 0.90919 1.25000 0.95313 0.99024 0.95123 1.69957 1.13099 1.20399 1.50426 0.86471 0.81224 0.81336 0.78312 1.20601 1.21238 1.19696 1.21494 0.93180 0.98275 0.95434 0.91348 0.91927 0.91294 0.86309 0.86141 0.90987 0.92982 0.88790 0.92927 0.92895 0.92901 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.01 0.36 -0.85 16 2 C -0.11 -1.59 5.87 -104.69 -0.61 -2.21 16 3 C -0.10 -1.30 9.69 -39.46 -0.38 -1.68 16 4 C -0.14 -1.94 9.66 -39.65 -0.38 -2.32 16 5 C -0.04 -0.71 5.92 -104.15 -0.62 -1.32 16 6 C -0.12 -1.92 8.73 36.00 0.31 -1.60 16 7 C -0.16 -2.99 5.87 -105.06 -0.62 -3.61 16 8 C 0.39 8.91 7.04 -30.68 -0.22 8.69 16 9 O -0.46 -11.19 12.46 5.58 0.07 -11.12 16 10 C -0.02 -0.52 4.16 -29.03 -0.12 -0.64 16 11 C -0.52 -14.93 8.92 -34.44 -0.31 -15.23 16 12 H 0.07 2.16 6.75 -52.49 -0.35 1.81 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 15 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.07 -1.11 9.11 -39.11 -0.36 -1.47 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 22 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 23 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 24 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.05 0.68 8.04 -51.93 -0.42 0.26 16 27 H 0.09 1.74 5.87 -51.93 -0.30 1.43 16 28 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.05 1.37 7.91 -51.93 -0.41 0.96 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.14 2.31 6.99 -52.49 -0.37 1.95 16 LS Contribution 267.63 15.07 4.03 4.03 Total: -1.00 -30.95 267.63 -7.16 -38.11 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -3.94 Total: -1.68 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -3.04 Total: -20.74 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.95 -7.16 -38.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041203884.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.526 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds