Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48494 * 109.46956 * 270.00420 * 3 2 1 5 5 H 1.48497 * 109.46891 * 30.00726 * 3 2 1 6 6 H 1.48498 * 109.47011 * 150.00655 * 3 2 1 7 7 C 1.38648 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00723 * 359.97438 * 7 2 1 9 9 O 1.34836 * 119.99748 * 179.97438 * 7 2 1 10 10 C 1.35748 * 116.99779 * 185.05894 * 9 7 2 11 11 C 1.38907 * 120.19346 * 354.47950 * 10 9 7 12 12 C 1.37786 * 119.70692 * 180.10222 * 11 10 9 13 13 C 1.38995 * 120.63760 * 0.02562 * 12 11 10 14 14 C 1.37750 * 119.79208 * 359.74364 * 13 12 11 15 15 C 1.38580 * 120.18764 * 174.45721 * 10 9 7 16 16 C 1.50645 * 122.55371 * 180.73587 * 14 13 12 17 17 C 1.52724 * 110.59880 * 342.00243 * 16 14 13 18 18 C 1.53320 * 108.39226 * 51.14869 * 17 16 14 19 19 C 1.50663 * 117.68890 * 179.42356 * 13 12 11 20 20 H 0.96997 * 120.00664 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.14777 * 0.12688 * 11 10 9 22 22 H 1.07995 * 119.68016 * 179.97438 * 12 11 10 23 23 H 1.07996 * 119.74972 * 0.03458 * 15 10 9 24 24 H 1.08999 * 109.24868 * 102.29084 * 16 14 13 25 25 H 1.09000 * 109.25352 * 221.70826 * 16 14 13 26 26 H 1.09001 * 109.67980 * 170.87070 * 17 16 14 27 27 H 1.09004 * 109.67791 * 291.42281 * 17 16 14 28 28 H 1.08997 * 109.68052 * 49.86946 * 18 17 16 29 29 H 1.09000 * 109.67942 * 170.42870 * 18 17 16 30 30 H 1.09005 * 109.24795 * 282.57643 * 19 13 12 31 31 H 1.08988 * 109.25318 * 42.00178 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4402 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2007 -0.0011 10 6 3.9734 -2.4055 -0.1082 11 6 3.2257 -3.5761 -0.0959 12 6 3.8617 -4.7937 -0.2032 13 6 5.2448 -4.8623 -0.3232 14 6 5.9886 -3.7029 -0.3405 15 6 5.3520 -2.4746 -0.2310 16 6 7.4881 -3.7040 -0.4842 17 6 8.0581 -5.0830 -0.1586 18 6 7.2918 -6.1287 -0.9770 19 6 5.8720 -6.2285 -0.4228 20 1 -0.4851 0.8400 0.0004 21 1 2.1506 -3.5321 -0.0030 22 1 3.2801 -5.7036 -0.1931 23 1 5.9353 -1.5658 -0.2407 24 1 7.7512 -3.4390 -1.5082 25 1 7.9150 -2.9685 0.1977 26 1 9.1156 -5.1144 -0.4210 27 1 7.9370 -5.2884 0.9051 28 1 7.2570 -5.8231 -2.0226 29 1 7.7874 -7.0959 -0.8929 30 1 5.9039 -6.6824 0.5678 31 1 5.2711 -6.8525 -1.0842 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042417577.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -24.870476 kcal Electronic energy + Delta-G solvation = -14166.777058 eV Core-core repulsion = 11798.801211 eV Total energy + Delta-G solvation = -2367.975846 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.59184 -37.78439 -34.74772 -32.39458 -31.91677 -29.07017 -28.21291 -25.05438 -23.24457 -21.85673 -21.57609 -19.14569 -17.59209 -16.94785 -15.41221 -14.87085 -14.61842 -14.03612 -13.70753 -13.69011 -13.57828 -12.84505 -12.50366 -12.28974 -12.25347 -12.00588 -11.65831 -11.04075 -10.98833 -10.75021 -10.38349 -10.33803 -10.09292 -10.06168 -9.34818 -8.82390 -8.04985 -7.22519 -6.39342 -4.05981 2.10855 2.25878 3.23026 3.26664 3.41603 4.25490 4.45301 4.76240 4.98952 5.04001 5.07193 5.13754 5.50541 5.53839 5.68745 5.77088 5.79092 5.82399 6.02001 6.04801 6.13329 6.17482 6.24074 6.44149 6.44518 6.65650 6.82492 7.11819 7.32564 7.35067 7.64294 7.82981 8.06651 8.96210 9.59479 10.68572 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.055084 B = 0.007104 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.195603 B = 3940.631442 C = 4397.559299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.159 3.841 11 C -0.217 4.217 12 C -0.077 4.077 13 C -0.164 4.164 14 C -0.037 4.037 15 C -0.197 4.197 16 C -0.076 4.076 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.064 4.064 20 H 0.279 0.721 21 H 0.132 0.868 22 H 0.108 0.892 23 H 0.114 0.886 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.462 -8.647 -0.931 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.108 3.892 11 C -0.236 4.236 12 C -0.095 4.095 13 C -0.165 4.165 14 C -0.037 4.037 15 C -0.217 4.217 16 C -0.113 4.113 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.101 4.101 20 H 0.089 0.911 21 H 0.150 0.850 22 H 0.126 0.874 23 H 0.133 0.867 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.334 -8.273 -0.904 14.879 hybrid contribution -0.089 0.735 0.005 0.740 sum 12.244 -7.538 -0.899 14.407 Atomic orbital electron populations 1.69644 1.05542 1.28420 1.48380 1.24453 0.95017 0.98777 0.95763 0.86184 0.80324 0.81482 0.78927 1.19917 1.20797 1.18403 1.20760 0.76942 0.96599 1.52197 0.87711 1.83571 1.22543 1.25674 1.80711 1.18999 0.91667 0.85501 0.93073 1.21242 1.01062 0.91978 1.09306 1.20800 0.93579 0.96766 0.98332 1.19113 0.93195 0.93787 1.10404 1.19071 0.94246 0.91783 0.98636 1.20146 0.91942 0.97290 1.12279 1.20403 0.91937 0.97360 1.01649 1.21513 0.98588 0.94943 1.00359 1.21522 0.95723 0.98479 0.99794 1.20229 0.95227 0.94271 1.00390 0.91105 0.84998 0.87350 0.86749 0.91148 0.91242 0.92107 0.91820 0.91889 0.92242 0.92046 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.76 13.96 55.48 0.77 -24.99 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.98 28.62 -169.99 -4.86 17.11 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.39 -11.17 9.95 30.88 0.31 -10.86 16 8 H 0.11 3.07 5.45 -52.49 -0.29 2.78 16 9 O -0.22 -5.93 8.59 0.04 0.00 -5.93 16 10 C 0.16 3.79 6.64 -39.21 -0.26 3.53 16 11 C -0.22 -4.81 9.17 -39.50 -0.36 -5.17 16 12 C -0.08 -1.43 9.60 -39.47 -0.38 -1.81 16 13 C -0.16 -2.83 5.74 -104.54 -0.60 -3.43 16 14 C -0.04 -0.66 5.74 -104.63 -0.60 -1.26 16 15 C -0.20 -4.06 9.55 -39.25 -0.37 -4.43 16 16 C -0.08 -1.05 5.67 -28.05 -0.16 -1.21 16 17 C -0.12 -1.34 5.98 -26.71 -0.16 -1.50 16 18 C -0.12 -1.35 5.98 -26.70 -0.16 -1.51 16 19 C -0.06 -0.86 5.67 -28.04 -0.16 -1.02 16 20 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.13 3.06 5.66 -52.49 -0.30 2.76 16 22 H 0.11 1.74 8.05 -52.49 -0.42 1.32 16 23 H 0.11 2.21 8.05 -52.49 -0.42 1.79 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.90 8.12 -51.93 -0.42 0.47 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 28 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.77 8.12 -51.94 -0.42 0.35 16 LS Contribution 258.20 15.07 3.89 3.89 Total: -1.00 -29.58 258.20 -7.14 -36.72 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -3.94 Total: 0.19 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -3.00 Total: -26.99 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 0.77 Total: -24.99 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: 0.00 Total: -5.93 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.86 Total: 17.11 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.58 -7.14 -36.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042417577.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.845 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds