Wall clock time and date at job start Mon Mar 30 2020 02:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86803 * 119.99810 * 2 1 4 4 H 1.48494 * 109.46956 * 270.00420 * 3 2 1 5 5 H 1.48497 * 109.46891 * 30.00726 * 3 2 1 6 6 H 1.48498 * 109.47011 * 150.00655 * 3 2 1 7 7 C 1.38648 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00723 * 359.97438 * 7 2 1 9 9 O 1.34836 * 119.99748 * 179.97438 * 7 2 1 10 10 C 1.35748 * 116.99779 * 185.05894 * 9 7 2 11 11 C 1.38907 * 120.19346 * 354.47950 * 10 9 7 12 12 C 1.37786 * 119.70692 * 180.10222 * 11 10 9 13 13 C 1.38995 * 120.63760 * 0.02562 * 12 11 10 14 14 C 1.37750 * 119.79208 * 359.74364 * 13 12 11 15 15 C 1.38580 * 120.18764 * 174.45721 * 10 9 7 16 16 C 1.50645 * 122.55371 * 180.73587 * 14 13 12 17 17 C 1.52724 * 110.59880 * 342.00243 * 16 14 13 18 18 C 1.53320 * 108.39226 * 51.14869 * 17 16 14 19 19 C 1.50663 * 117.68890 * 179.42356 * 13 12 11 20 20 H 0.96997 * 120.00664 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.14777 * 0.12688 * 11 10 9 22 22 H 1.07995 * 119.68016 * 179.97438 * 12 11 10 23 23 H 1.07996 * 119.74972 * 0.03458 * 15 10 9 24 24 H 1.08999 * 109.24868 * 102.29084 * 16 14 13 25 25 H 1.09000 * 109.25352 * 221.70826 * 16 14 13 26 26 H 1.09001 * 109.67980 * 170.87070 * 17 16 14 27 27 H 1.09004 * 109.67791 * 291.42281 * 17 16 14 28 28 H 1.08997 * 109.68052 * 49.86946 * 18 17 16 29 29 H 1.09000 * 109.67942 * 170.42870 * 18 17 16 30 30 H 1.09005 * 109.24795 * 282.57643 * 19 13 12 31 31 H 1.08988 * 109.25318 * 42.00178 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4402 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3571 -1.2007 -0.0011 10 6 3.9734 -2.4055 -0.1082 11 6 3.2257 -3.5761 -0.0959 12 6 3.8617 -4.7937 -0.2032 13 6 5.2448 -4.8623 -0.3232 14 6 5.9886 -3.7029 -0.3405 15 6 5.3520 -2.4746 -0.2310 16 6 7.4881 -3.7040 -0.4842 17 6 8.0581 -5.0830 -0.1586 18 6 7.2918 -6.1287 -0.9770 19 6 5.8720 -6.2285 -0.4228 20 1 -0.4851 0.8400 0.0004 21 1 2.1506 -3.5321 -0.0030 22 1 3.2801 -5.7036 -0.1931 23 1 5.9353 -1.5658 -0.2407 24 1 7.7512 -3.4390 -1.5082 25 1 7.9150 -2.9685 0.1977 26 1 9.1156 -5.1144 -0.4210 27 1 7.9370 -5.2884 0.9051 28 1 7.2570 -5.8231 -2.0226 29 1 7.7874 -7.0959 -0.8929 30 1 5.9039 -6.6824 0.5678 31 1 5.2711 -6.8525 -1.0842 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042417577.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:36 Heat of formation + Delta-G solvation = -41.528150 kcal Electronic energy + Delta-G solvation = -14167.499389 eV Core-core repulsion = 11798.801211 eV Total energy + Delta-G solvation = -2368.698177 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.17354 -39.40482 -36.13160 -34.44289 -33.30344 -30.48916 -29.67810 -27.01938 -24.49497 -23.24756 -23.03017 -20.63815 -19.41805 -18.75180 -16.78815 -16.59834 -16.03458 -15.74931 -15.34387 -15.16698 -14.61143 -14.53963 -14.10798 -14.07999 -13.57036 -13.37390 -12.93399 -12.83477 -12.62940 -12.02311 -11.88833 -11.65027 -11.56050 -11.23718 -11.07784 -10.87526 -9.61332 -8.91249 -8.51648 -6.24351 0.50556 0.64653 1.29029 1.33516 1.50033 2.26575 2.72516 3.00720 3.12142 3.87062 3.92775 4.11174 4.14049 4.34330 4.38448 4.45740 4.64055 4.74593 4.75666 4.90011 5.03769 5.13264 5.15106 5.21308 5.25399 5.32743 5.45550 5.54921 5.64889 5.76687 5.82486 5.95060 6.26447 6.82598 7.57566 8.60228 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.055084 B = 0.007104 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.195603 B = 3940.631442 C = 4397.559299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.401 4.401 8 H 0.079 0.921 9 O -0.247 6.247 10 C 0.117 3.883 11 C -0.238 4.238 12 C -0.079 4.079 13 C -0.147 4.147 14 C -0.037 4.037 15 C -0.200 4.200 16 C -0.078 4.078 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.067 4.067 20 H 0.285 0.715 21 H 0.107 0.893 22 H 0.136 0.864 23 H 0.123 0.877 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.762 -10.138 -1.258 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.478 4.478 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.068 3.932 11 C -0.257 4.257 12 C -0.097 4.097 13 C -0.148 4.148 14 C -0.037 4.037 15 C -0.219 4.219 16 C -0.115 4.115 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.104 4.104 20 H 0.095 0.905 21 H 0.125 0.875 22 H 0.154 0.846 23 H 0.141 0.859 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.659 -9.804 -1.235 18.516 hybrid contribution -0.943 0.892 0.085 1.301 sum 14.716 -8.912 -1.149 17.242 Atomic orbital electron populations 1.69726 1.06871 1.29617 1.50261 1.25284 0.95907 1.02149 0.95509 0.85207 0.78729 0.77372 0.79319 1.19007 1.18942 1.18901 1.20709 0.78146 0.96119 1.52782 0.90348 1.83508 1.21201 1.27362 1.83409 1.19541 0.93149 0.85127 0.95352 1.21248 1.00114 0.93378 1.10973 1.21155 0.94894 0.96287 0.97405 1.19751 0.92539 0.96109 1.06392 1.19654 0.96877 0.90619 0.96524 1.20490 0.90626 0.99216 1.11607 1.20538 0.88581 0.99604 1.02784 1.21544 1.00101 0.93077 1.00408 1.21555 0.94303 1.00047 0.99453 1.20380 0.96677 0.91419 1.01932 0.90537 0.87481 0.84602 0.85886 0.89817 0.90323 0.89298 0.91848 0.92012 0.89373 0.90465 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.28 13.96 21.61 0.30 -55.98 16 2 C 0.01 0.57 5.49 84.83 0.47 1.04 16 3 Si 0.97 46.52 28.62 68.60 1.96 48.49 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.40 -24.47 9.95 67.92 0.68 -23.79 16 8 H 0.08 5.01 5.45 -2.91 -0.02 5.00 16 9 O -0.25 -14.00 8.59 -22.78 -0.20 -14.20 16 10 C 0.12 5.78 6.64 22.51 0.15 5.93 16 11 C -0.24 -11.05 9.17 22.32 0.20 -10.85 16 12 C -0.08 -2.91 9.60 22.34 0.21 -2.70 16 13 C -0.15 -4.69 5.74 -19.81 -0.11 -4.81 16 14 C -0.04 -1.21 5.74 -19.87 -0.11 -1.32 16 15 C -0.20 -8.19 9.55 22.48 0.21 -7.97 16 16 C -0.08 -1.84 5.67 29.74 0.17 -1.67 16 17 C -0.11 -2.03 5.98 30.61 0.18 -1.85 16 18 C -0.12 -2.04 5.98 30.61 0.18 -1.86 16 19 C -0.07 -1.49 5.67 29.75 0.17 -1.32 16 20 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 21 H 0.11 5.42 5.66 -2.91 -0.02 5.40 16 22 H 0.14 4.15 8.05 -2.91 -0.02 4.12 16 23 H 0.12 4.70 8.05 -2.91 -0.02 4.68 16 24 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 25 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 28 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.08 1.54 8.12 -2.39 -0.02 1.52 16 Total: -1.00 -67.58 258.20 5.59 -61.99 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.12 Total: 10.87 kcal Atomic # 6 Polarization: -53.58 SS G_CDS: 2.40 Total: -51.17 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.30 Total: -55.98 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.20 Total: -14.20 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.96 Total: 48.49 kcal Total: -67.58 5.59 -61.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042417577.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.467 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds