Wall clock time and date at job start Mon Mar 30 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38396 * 119.91338 * 2 1 4 4 C 1.38406 * 120.34881 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.91659 * 179.97438 * 4 3 2 6 6 C 1.37888 * 120.17026 * 359.97233 * 4 3 2 7 7 C 1.39855 * 119.82486 * 0.02562 * 6 4 3 8 8 C 1.47168 * 120.17344 * 179.72453 * 7 6 4 9 9 O 1.21255 * 119.99718 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99955 * 179.97438 * 8 7 6 11 11 C 1.50706 * 109.46768 * 180.02562 * 10 8 7 12 12 H 1.08001 * 120.00058 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99531 * 180.02562 * 11 10 8 14 14 N 1.31510 * 120.00097 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99527 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46925 * 60.00213 * 15 13 11 17 17 H 1.48501 * 109.46888 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47387 * 300.00024 * 15 13 11 19 19 C 1.37882 * 119.90784 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.47215 * 89.99865 * 1 2 3 21 21 H 1.09000 * 109.47687 * 210.00659 * 1 2 3 22 22 H 1.09006 * 109.46864 * 330.00785 * 1 2 3 23 23 H 1.08002 * 119.83274 * 359.96922 * 3 2 1 24 24 H 1.09001 * 109.46996 * 269.97593 * 5 4 3 25 25 H 1.08994 * 109.46888 * 29.97528 * 5 4 3 26 26 H 1.09005 * 109.47137 * 149.97797 * 5 4 3 27 27 H 1.07999 * 120.08813 * 179.97438 * 6 4 3 28 28 H 1.08992 * 109.47353 * 299.99848 * 10 8 7 29 29 H 1.09001 * 109.47108 * 60.00409 * 10 8 7 30 30 H 0.97009 * 119.99472 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.09422 * 0.04730 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1996 0.0000 4 6 3.5812 1.2101 -0.0005 5 6 4.3229 2.5220 -0.0011 6 6 4.2833 0.0233 -0.0005 7 6 3.5931 -1.1931 -0.0005 8 6 4.3347 -2.4643 -0.0065 9 8 5.5472 -2.4588 -0.0111 10 6 3.5870 -3.7727 -0.0059 11 6 4.5715 -4.9138 -0.0122 12 1 5.6324 -4.7116 -0.0158 13 6 4.1177 -6.2157 -0.0133 14 7 2.8259 -6.4618 -0.0083 15 14 5.3381 -7.6300 -0.0218 16 1 6.1966 -7.5503 1.1874 17 1 4.6014 -8.9194 -0.0210 18 1 6.1863 -7.5447 -1.2377 19 6 2.1946 -1.1952 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5137 23 1 1.6531 2.1325 -0.0005 24 1 4.5017 2.8378 -1.0289 25 1 3.7270 3.2764 0.5124 26 1 5.2765 2.4005 0.5127 27 1 5.3632 0.0331 -0.0013 28 1 2.9647 -3.8352 0.8868 29 1 2.9566 -3.8314 -0.8932 30 1 2.5067 -7.3779 -0.0087 31 1 1.6546 -2.1306 0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043393012.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:46 Heat of formation + Delta-G solvation = -36.331898 kcal Electronic energy + Delta-G solvation = -13809.265255 eV Core-core repulsion = 11440.792404 eV Total energy + Delta-G solvation = -2368.472851 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.56698 -37.69193 -33.50312 -32.91633 -31.92440 -29.03219 -27.26268 -26.38748 -24.47212 -22.28826 -20.42099 -18.48326 -16.61824 -15.96813 -15.47155 -14.90853 -14.45819 -14.19778 -13.53795 -13.50590 -13.18665 -13.16409 -12.80231 -12.49076 -12.02963 -11.82454 -11.42966 -11.27742 -11.09489 -10.82563 -10.81709 -10.59846 -10.01942 -9.27278 -8.52868 -8.49472 -8.42412 -8.37765 -6.05443 -4.05968 1.14851 1.57837 3.16557 3.36836 3.39139 3.44512 4.17704 4.44690 4.84088 4.86669 4.95711 5.27453 5.32413 5.39469 5.46600 5.58809 5.65285 5.69722 5.70498 5.86000 5.92772 6.21596 6.26914 6.50371 6.66610 6.73725 6.87640 7.17812 7.24134 7.34830 7.93725 8.22681 8.66808 9.02834 9.58846 11.06641 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.041533 B = 0.006731 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.992826 B = 4159.129810 C = 4807.369165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.105 4.105 4 C -0.104 4.104 5 C -0.110 4.110 6 C -0.079 4.079 7 C -0.148 4.148 8 C 0.390 3.610 9 O -0.462 6.462 10 C -0.020 4.020 11 C -0.517 4.517 12 H 0.072 0.928 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.075 4.075 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.119 0.881 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.128 0.872 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.262 0.738 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 14.982 -0.004 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.123 4.123 4 C -0.104 4.104 5 C -0.167 4.167 6 C -0.097 4.097 7 C -0.149 4.149 8 C 0.268 3.732 9 O -0.337 6.337 10 C -0.057 4.057 11 C -0.555 4.555 12 H 0.090 0.910 13 C -0.144 4.144 14 N -0.539 5.539 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.093 4.093 20 H 0.087 0.913 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.137 0.863 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.146 0.854 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.735 14.834 -0.004 15.297 hybrid contribution 0.419 -0.810 -0.017 0.912 sum -3.316 14.024 -0.022 14.411 Atomic orbital electron populations 1.20772 0.91047 1.02730 1.02286 1.19862 0.96153 0.92987 1.01088 1.21006 0.93438 0.97372 1.00466 1.19810 0.93804 0.95188 1.01586 1.20749 0.99956 0.93835 1.02133 1.21321 1.00320 0.91042 0.96991 1.21140 0.94707 0.95964 1.03051 1.23409 0.89205 0.90584 0.70005 1.90351 1.16912 1.90001 1.36463 1.19530 0.97285 0.89319 0.99562 1.21157 0.93836 0.89915 1.50639 0.91007 1.24995 0.95326 0.99002 0.95073 1.69947 1.12703 1.20334 1.50905 0.86520 0.81016 0.80848 0.78851 1.20125 1.21295 1.20120 1.21508 0.93255 0.98287 0.96277 0.91264 0.91182 0.91863 0.86307 0.91389 0.91779 0.91562 0.85393 0.92794 0.92803 0.92829 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.10 -1.41 5.87 -104.69 -0.61 -2.03 16 3 C -0.10 -1.37 9.34 -39.46 -0.37 -1.73 16 4 C -0.10 -1.45 5.87 -104.69 -0.61 -2.06 16 5 C -0.11 -1.15 10.01 36.01 0.36 -0.78 16 6 C -0.08 -1.33 9.25 -39.10 -0.36 -1.70 16 7 C -0.15 -2.83 5.87 -105.06 -0.62 -3.45 16 8 C 0.39 9.10 7.11 -30.68 -0.22 8.88 16 9 O -0.46 -11.87 15.45 5.58 0.09 -11.78 16 10 C -0.02 -0.53 4.07 -29.03 -0.12 -0.64 16 11 C -0.52 -15.12 8.92 -34.44 -0.31 -15.43 16 12 H 0.07 2.16 6.75 -52.49 -0.35 1.81 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.46 13.29 55.43 0.74 -25.73 16 15 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.08 -1.27 9.12 -39.11 -0.36 -1.62 16 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 22 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 23 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.55 8.08 -51.93 -0.42 0.14 16 26 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.13 2.17 7.65 -52.49 -0.40 1.76 16 28 H 0.05 1.40 8.09 -51.93 -0.42 0.98 16 29 H 0.05 1.40 8.08 -51.93 -0.42 0.98 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.14 2.31 7.05 -52.48 -0.37 1.94 16 LS Contribution 273.11 15.07 4.12 4.12 Total: -1.00 -31.62 273.11 -7.08 -38.70 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -4.05 Total: -2.61 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.95 Total: -19.86 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.74 Total: -25.73 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.62 -7.08 -38.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043393012.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.371 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds