Wall clock time and date at job start Mon Mar 30 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38396 * 119.91338 * 2 1 4 4 C 1.38406 * 120.34881 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.91659 * 179.97438 * 4 3 2 6 6 C 1.37888 * 120.17026 * 359.97233 * 4 3 2 7 7 C 1.39855 * 119.82486 * 0.02562 * 6 4 3 8 8 C 1.47168 * 120.17344 * 179.72453 * 7 6 4 9 9 O 1.21255 * 119.99718 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99955 * 179.97438 * 8 7 6 11 11 C 1.50706 * 109.46768 * 180.02562 * 10 8 7 12 12 H 1.08001 * 120.00058 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99531 * 180.02562 * 11 10 8 14 14 N 1.31510 * 120.00097 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99527 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46925 * 60.00213 * 15 13 11 17 17 H 1.48501 * 109.46888 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47387 * 300.00024 * 15 13 11 19 19 C 1.37882 * 119.90784 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.47215 * 89.99865 * 1 2 3 21 21 H 1.09000 * 109.47687 * 210.00659 * 1 2 3 22 22 H 1.09006 * 109.46864 * 330.00785 * 1 2 3 23 23 H 1.08002 * 119.83274 * 359.96922 * 3 2 1 24 24 H 1.09001 * 109.46996 * 269.97593 * 5 4 3 25 25 H 1.08994 * 109.46888 * 29.97528 * 5 4 3 26 26 H 1.09005 * 109.47137 * 149.97797 * 5 4 3 27 27 H 1.07999 * 120.08813 * 179.97438 * 6 4 3 28 28 H 1.08992 * 109.47353 * 299.99848 * 10 8 7 29 29 H 1.09001 * 109.47108 * 60.00409 * 10 8 7 30 30 H 0.97009 * 119.99472 * 180.02562 * 14 13 11 31 31 H 1.08003 * 120.09422 * 0.04730 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1996 0.0000 4 6 3.5812 1.2101 -0.0005 5 6 4.3229 2.5220 -0.0011 6 6 4.2833 0.0233 -0.0005 7 6 3.5931 -1.1931 -0.0005 8 6 4.3347 -2.4643 -0.0065 9 8 5.5472 -2.4588 -0.0111 10 6 3.5870 -3.7727 -0.0059 11 6 4.5715 -4.9138 -0.0122 12 1 5.6324 -4.7116 -0.0158 13 6 4.1177 -6.2157 -0.0133 14 7 2.8259 -6.4618 -0.0083 15 14 5.3381 -7.6300 -0.0218 16 1 6.1966 -7.5503 1.1874 17 1 4.6014 -8.9194 -0.0210 18 1 6.1863 -7.5447 -1.2377 19 6 2.1946 -1.1952 0.0005 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5137 23 1 1.6531 2.1325 -0.0005 24 1 4.5017 2.8378 -1.0289 25 1 3.7270 3.2764 0.5124 26 1 5.2765 2.4005 0.5127 27 1 5.3632 0.0331 -0.0013 28 1 2.9647 -3.8352 0.8868 29 1 2.9566 -3.8314 -0.8932 30 1 2.5067 -7.3779 -0.0087 31 1 1.6546 -2.1306 0.0002 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043393012.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:46 Heat of formation + Delta-G solvation = -54.258688 kcal Electronic energy + Delta-G solvation = -13810.042618 eV Core-core repulsion = 11440.792404 eV Total energy + Delta-G solvation = -2369.250215 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.99160 -39.33623 -35.20230 -34.47451 -33.29334 -31.01506 -28.21892 -27.54991 -26.34507 -23.97235 -21.54145 -20.13745 -18.65047 -17.45979 -17.03522 -16.42121 -16.27743 -15.87474 -15.11125 -14.76283 -14.58637 -14.13370 -13.96874 -13.86909 -13.30322 -13.29362 -12.90981 -12.71536 -12.62401 -12.43941 -12.37925 -12.12762 -11.94673 -11.47042 -10.66145 -10.35771 -9.75591 -9.54978 -8.28083 -6.37467 -0.23905 0.38697 1.37246 1.40384 1.49150 1.57397 2.37668 2.81859 3.06418 3.30422 3.82783 3.88021 4.16488 4.36531 4.39529 4.44765 4.68668 4.76304 4.84778 4.89853 4.91658 5.02343 5.08450 5.19584 5.21777 5.35295 5.43530 5.55592 5.59794 5.67906 6.01859 6.08272 6.71761 6.81240 7.31493 8.83739 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.041533 B = 0.006731 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.992826 B = 4159.129810 C = 4807.369165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.090 4.090 4 C -0.098 4.098 5 C -0.109 4.109 6 C -0.093 4.093 7 C -0.177 4.177 8 C 0.393 3.607 9 O -0.498 6.498 10 C -0.016 4.016 11 C -0.550 4.550 12 H 0.055 0.945 13 C 0.011 3.989 14 N -0.923 5.923 15 Si 0.965 3.035 16 H -0.272 1.272 17 H -0.272 1.272 18 H -0.271 1.271 19 C -0.089 4.089 20 H 0.082 0.918 21 H 0.066 0.934 22 H 0.091 0.909 23 H 0.163 0.837 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.268 0.732 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 17.016 -0.012 17.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.107 4.107 4 C -0.098 4.098 5 C -0.165 4.165 6 C -0.111 4.111 7 C -0.178 4.178 8 C 0.274 3.726 9 O -0.376 6.376 10 C -0.053 4.053 11 C -0.588 4.588 12 H 0.073 0.927 13 C -0.188 4.188 14 N -0.562 5.562 15 Si 0.789 3.211 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.197 1.197 19 C -0.108 4.108 20 H 0.100 0.900 21 H 0.085 0.915 22 H 0.109 0.891 23 H 0.181 0.819 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.810 16.876 -0.011 17.548 hybrid contribution 0.658 -1.344 -0.017 1.496 sum -4.152 15.532 -0.028 16.078 Atomic orbital electron populations 1.20856 0.88381 1.03999 1.03484 1.20252 0.98042 0.92111 0.99301 1.21530 0.93141 0.98598 0.97462 1.20227 0.94602 0.95438 0.99580 1.20837 1.00011 0.92234 1.03438 1.21372 1.00122 0.91562 0.98027 1.20727 0.95495 0.94439 1.07143 1.23384 0.88745 0.91711 0.68767 1.90313 1.18107 1.90582 1.38634 1.19387 0.96719 0.90543 0.98643 1.21413 0.93681 0.91743 1.51977 0.92715 1.25825 0.97329 1.01416 0.94201 1.70029 1.14168 1.21293 1.50730 0.85504 0.78769 0.77830 0.78965 1.19670 1.19624 1.19657 1.21523 0.92346 0.99493 0.97401 0.89968 0.91545 0.89051 0.81935 0.89989 0.89054 0.91566 0.86341 0.93718 0.93716 0.92270 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.24 0.71 -1.31 16 2 C -0.10 -2.49 5.87 -19.91 -0.12 -2.61 16 3 C -0.09 -1.98 9.34 22.35 0.21 -1.77 16 4 C -0.10 -2.49 5.87 -19.91 -0.12 -2.60 16 5 C -0.11 -1.86 10.01 71.24 0.71 -1.15 16 6 C -0.09 -3.16 9.25 22.58 0.21 -2.95 16 7 C -0.18 -7.04 5.87 -20.15 -0.12 -7.16 16 8 C 0.39 19.49 7.11 28.03 0.20 19.69 16 9 O -0.50 -27.19 15.45 -2.95 -0.05 -27.23 16 10 C -0.02 -0.88 4.07 29.10 0.12 -0.77 16 11 C -0.55 -33.60 8.92 25.60 0.23 -33.37 16 12 H 0.05 3.46 6.75 -2.91 -0.02 3.44 16 13 C 0.01 0.66 5.46 84.66 0.46 1.12 16 14 N -0.92 -55.22 13.29 21.45 0.28 -54.94 16 15 Si 0.97 46.07 29.54 68.60 2.03 48.10 16 16 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 19 C -0.09 -3.05 9.12 22.58 0.21 -2.85 16 20 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 21 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 22 H 0.09 1.19 8.08 -2.38 -0.02 1.17 16 23 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.09 1.10 8.08 -2.39 -0.02 1.09 16 26 H 0.07 1.16 8.08 -2.38 -0.02 1.14 16 27 H 0.12 4.16 7.65 -2.91 -0.02 4.14 16 28 H 0.04 2.48 8.09 -2.39 -0.02 2.46 16 29 H 0.04 2.48 8.08 -2.39 -0.02 2.46 16 30 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 31 H 0.13 4.46 7.05 -2.91 -0.02 4.44 16 Total: -1.00 -70.78 273.11 6.08 -64.70 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 1.11 Total: 5.08 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 2.71 Total: -35.71 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.28 Total: -54.94 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.05 Total: -27.23 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -70.78 6.08 -64.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043393012.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.443 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds