Wall clock time and date at job start Mon Mar 30 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37909 * 120.08702 * 2 1 4 4 C 1.38382 * 120.17223 * 179.97438 * 3 2 1 5 5 C 1.38426 * 120.35117 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.16978 * 359.97002 * 5 4 3 7 7 C 1.39838 * 120.09181 * 179.71331 * 2 1 3 8 8 C 1.47171 * 120.16691 * 0.03133 * 7 2 1 9 9 O 1.21252 * 119.99893 * 5.83117 * 8 7 2 10 10 C 1.50694 * 119.99883 * 185.83485 * 8 7 2 11 11 H 1.08996 * 109.47045 * 35.00025 * 10 8 7 12 12 C 1.52998 * 109.47462 * 274.99756 * 10 8 7 13 13 C 1.50707 * 109.47315 * 154.99737 * 10 8 7 14 14 H 1.08002 * 119.99561 * 359.97438 * 13 10 8 15 15 C 1.37871 * 120.00343 * 179.97438 * 13 10 8 16 16 N 1.31519 * 119.99927 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00102 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46769 * 90.00470 * 17 15 13 19 19 H 1.48502 * 109.47015 * 209.99987 * 17 15 13 20 20 H 1.48491 * 109.47285 * 330.00039 * 17 15 13 21 21 H 1.09005 * 109.46562 * 96.61024 * 1 2 3 22 22 H 1.08995 * 109.46995 * 336.60943 * 1 2 3 23 23 H 1.09001 * 109.47161 * 216.60196 * 1 2 3 24 24 H 1.08000 * 119.91385 * 359.97438 * 3 2 1 25 25 H 1.07999 * 119.82596 * 179.97438 * 4 3 2 26 26 H 1.08003 * 119.91628 * 180.02562 * 5 4 3 27 27 H 1.08002 * 120.08332 * 180.02562 * 6 5 4 28 28 H 1.08997 * 109.47514 * 179.97438 * 12 10 8 29 29 H 1.09003 * 109.46567 * 300.00231 * 12 10 8 30 30 H 1.08997 * 109.47126 * 59.99713 * 12 10 8 31 31 H 0.96995 * 120.00280 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1933 0.0000 4 6 3.5822 1.1953 0.0005 5 6 4.2834 0.0018 0.0005 6 6 3.6067 -1.1994 0.0006 7 6 2.2081 -1.2099 0.0061 8 6 1.4780 -2.4877 0.0118 9 8 0.2703 -2.4964 -0.0955 10 6 2.2315 -3.7854 0.1509 11 1 3.0860 -3.6402 0.8118 12 6 2.7223 -4.2403 -1.2249 13 6 1.3201 -4.8357 0.7317 14 1 0.2976 -4.5881 0.9760 15 6 1.7915 -6.1126 0.9511 16 7 3.0367 -6.4139 0.6541 17 14 0.6619 -7.4143 1.6716 18 1 -0.0355 -8.1281 0.5718 19 1 1.4638 -8.3837 2.4607 20 1 -0.3403 -6.7660 2.5550 21 1 -0.3632 -0.1183 -1.0209 22 1 -0.3633 0.9432 0.4080 23 1 -0.3633 -0.8250 0.6128 24 1 1.6584 2.1286 -0.0004 25 1 4.1179 2.1331 0.0001 26 1 5.3634 0.0116 0.0014 27 1 4.1552 -2.1298 0.0011 28 1 3.2676 -5.1786 -1.1242 29 1 1.8676 -4.3854 -1.8858 30 1 3.3815 -3.4807 -1.6450 31 1 3.3683 -7.3124 0.8081 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048258980.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:58 Heat of formation + Delta-G solvation = -22.831047 kcal Electronic energy + Delta-G solvation = -14350.955371 eV Core-core repulsion = 11983.067961 eV Total energy + Delta-G solvation = -2367.887410 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.63878 -37.48656 -33.93016 -32.31271 -31.36311 -29.88047 -26.79365 -25.18081 -23.86016 -22.16636 -20.82145 -18.74377 -16.44199 -16.03147 -15.35596 -14.99184 -14.53203 -14.07926 -13.79575 -13.30381 -12.88117 -12.67891 -12.36469 -11.87166 -11.75154 -11.52693 -11.25452 -11.01809 -10.83135 -10.65122 -10.54264 -10.25771 -10.03947 -8.98616 -8.61795 -8.46401 -8.42742 -8.16084 -6.03788 -4.08476 1.18362 1.64121 3.22944 3.32522 3.38202 3.44003 4.20923 4.42740 4.95695 5.04917 5.14435 5.27431 5.29438 5.52715 5.67666 5.93882 6.04401 6.13025 6.18595 6.45431 6.53284 6.62578 6.70264 6.71234 6.87543 7.00530 7.01419 7.21680 7.51795 7.77048 8.00589 8.25501 8.68268 8.96600 9.56302 11.03159 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.042539 B = 0.008139 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.057694 B = 3439.431217 C = 3863.580518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.037 4.037 3 C -0.143 4.143 4 C -0.100 4.100 5 C -0.146 4.146 6 C -0.065 4.065 7 C -0.159 4.159 8 C 0.396 3.604 9 O -0.458 6.458 10 C 0.006 3.994 11 H 0.051 0.949 12 C -0.129 4.129 13 C -0.506 4.506 14 H 0.067 0.933 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 H 0.071 0.929 22 H 0.052 0.948 23 H 0.095 0.905 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.138 0.862 28 H 0.094 0.906 29 H 0.031 0.969 30 H 0.014 0.986 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 11.945 -1.520 12.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.037 4.037 3 C -0.161 4.161 4 C -0.118 4.118 5 C -0.164 4.164 6 C -0.083 4.083 7 C -0.160 4.160 8 C 0.275 3.725 9 O -0.334 6.334 10 C -0.013 4.013 11 H 0.069 0.931 12 C -0.187 4.187 13 C -0.544 4.544 14 H 0.085 0.915 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 H 0.090 0.910 22 H 0.071 0.929 23 H 0.113 0.887 24 H 0.138 0.862 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.156 0.844 28 H 0.112 0.888 29 H 0.050 0.950 30 H 0.033 0.967 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.533 11.781 -1.563 11.983 hybrid contribution -0.288 -0.634 0.359 0.783 sum 1.245 11.147 -1.204 11.281 Atomic orbital electron populations 1.21075 0.90629 1.02627 1.03365 1.20297 0.96648 0.92163 0.94638 1.20968 0.94274 0.97255 1.03630 1.21249 0.94205 0.97960 0.98397 1.21100 0.99888 0.92435 1.02931 1.21668 0.93431 0.98801 0.94374 1.20995 0.94701 0.95576 1.04744 1.23352 0.88971 0.90273 0.69944 1.90298 1.16973 1.89495 1.36628 1.19127 0.96622 0.89586 0.95981 0.93092 1.21689 0.99295 1.02254 0.95439 1.21097 0.97938 0.94360 1.41001 0.91462 1.24935 0.95182 0.98424 0.95493 1.69862 1.14570 1.20411 1.48456 0.86490 0.80601 0.81166 0.79190 1.20599 1.21227 1.19820 0.90996 0.92931 0.88659 0.86189 0.86297 0.85916 0.84390 0.88752 0.94951 0.96690 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.75 36.01 0.32 -1.64 16 2 C -0.04 -0.63 5.92 -104.14 -0.62 -1.25 16 3 C -0.14 -2.01 9.66 -39.65 -0.38 -2.40 16 4 C -0.10 -1.29 10.04 -39.46 -0.40 -1.69 16 5 C -0.15 -2.03 10.03 -39.65 -0.40 -2.43 16 6 C -0.06 -1.10 9.07 -39.11 -0.35 -1.45 16 7 C -0.16 -3.07 5.87 -105.06 -0.62 -3.69 16 8 C 0.40 9.08 6.16 -30.69 -0.19 8.89 16 9 O -0.46 -11.23 12.79 5.58 0.07 -11.16 16 10 C 0.01 0.14 1.83 -92.92 -0.17 -0.03 16 11 H 0.05 1.30 7.02 -51.93 -0.36 0.93 16 12 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 13 C -0.51 -14.27 8.33 -34.44 -0.29 -14.56 16 14 H 0.07 1.97 7.03 -52.49 -0.37 1.60 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 17 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 22 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 23 H 0.10 1.78 5.83 -51.93 -0.30 1.48 16 24 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 25 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 26 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 27 H 0.14 2.36 6.16 -52.49 -0.32 2.03 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.01 0.29 7.45 -51.93 -0.39 -0.09 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 261.18 15.07 3.94 3.94 Total: -1.00 -29.65 261.18 -6.98 -36.63 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -3.73 Total: -0.23 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -2.86 Total: -21.38 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.63 Total: -24.45 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.65 -6.98 -36.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048258980.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.799 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds