Wall clock time and date at job start Mon Mar 30 2020 03:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37909 * 120.08702 * 2 1 4 4 C 1.38382 * 120.17223 * 179.97438 * 3 2 1 5 5 C 1.38426 * 120.35117 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.16978 * 359.97002 * 5 4 3 7 7 C 1.39838 * 120.09181 * 179.71331 * 2 1 3 8 8 C 1.47171 * 120.16691 * 0.03133 * 7 2 1 9 9 O 1.21252 * 119.99893 * 5.83117 * 8 7 2 10 10 C 1.50694 * 119.99883 * 185.83485 * 8 7 2 11 11 H 1.08996 * 109.47045 * 35.00025 * 10 8 7 12 12 C 1.52998 * 109.47462 * 274.99756 * 10 8 7 13 13 C 1.50707 * 109.47315 * 154.99737 * 10 8 7 14 14 H 1.08002 * 119.99561 * 359.97438 * 13 10 8 15 15 C 1.37871 * 120.00343 * 179.97438 * 13 10 8 16 16 N 1.31519 * 119.99927 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00102 * 179.97438 * 15 13 10 18 18 H 1.48507 * 109.46769 * 90.00470 * 17 15 13 19 19 H 1.48502 * 109.47015 * 209.99987 * 17 15 13 20 20 H 1.48491 * 109.47285 * 330.00039 * 17 15 13 21 21 H 1.09005 * 109.46562 * 96.61024 * 1 2 3 22 22 H 1.08995 * 109.46995 * 336.60943 * 1 2 3 23 23 H 1.09001 * 109.47161 * 216.60196 * 1 2 3 24 24 H 1.08000 * 119.91385 * 359.97438 * 3 2 1 25 25 H 1.07999 * 119.82596 * 179.97438 * 4 3 2 26 26 H 1.08003 * 119.91628 * 180.02562 * 5 4 3 27 27 H 1.08002 * 120.08332 * 180.02562 * 6 5 4 28 28 H 1.08997 * 109.47514 * 179.97438 * 12 10 8 29 29 H 1.09003 * 109.46567 * 300.00231 * 12 10 8 30 30 H 1.08997 * 109.47126 * 59.99713 * 12 10 8 31 31 H 0.96995 * 120.00280 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1933 0.0000 4 6 3.5822 1.1953 0.0005 5 6 4.2834 0.0018 0.0005 6 6 3.6067 -1.1994 0.0006 7 6 2.2081 -1.2099 0.0061 8 6 1.4780 -2.4877 0.0118 9 8 0.2703 -2.4964 -0.0955 10 6 2.2315 -3.7854 0.1509 11 1 3.0860 -3.6402 0.8118 12 6 2.7223 -4.2403 -1.2249 13 6 1.3201 -4.8357 0.7317 14 1 0.2976 -4.5881 0.9760 15 6 1.7915 -6.1126 0.9511 16 7 3.0367 -6.4139 0.6541 17 14 0.6619 -7.4143 1.6716 18 1 -0.0355 -8.1281 0.5718 19 1 1.4638 -8.3837 2.4607 20 1 -0.3403 -6.7660 2.5550 21 1 -0.3632 -0.1183 -1.0209 22 1 -0.3633 0.9432 0.4080 23 1 -0.3633 -0.8250 0.6128 24 1 1.6584 2.1286 -0.0004 25 1 4.1179 2.1331 0.0001 26 1 5.3634 0.0116 0.0014 27 1 4.1552 -2.1298 0.0011 28 1 3.2676 -5.1786 -1.1242 29 1 1.8676 -4.3854 -1.8858 30 1 3.3815 -3.4807 -1.6450 31 1 3.3683 -7.3124 0.8081 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048258980.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:58 Heat of formation + Delta-G solvation = -39.043839 kcal Electronic energy + Delta-G solvation = -14351.658410 eV Core-core repulsion = 11983.067961 eV Total energy + Delta-G solvation = -2368.590450 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.10891 -38.98896 -35.92558 -33.63762 -32.99918 -31.50411 -28.06255 -27.29275 -25.41593 -23.67885 -22.15628 -20.37790 -18.38819 -17.62766 -16.94283 -16.33744 -16.22340 -15.63838 -15.23848 -15.06615 -14.31639 -14.17072 -13.94886 -13.51036 -13.18133 -12.95679 -12.89355 -12.69519 -12.58482 -12.39393 -12.24899 -12.10420 -11.87569 -11.07032 -10.56864 -9.95417 -9.83411 -9.62273 -8.17051 -6.29541 -0.14751 0.47227 1.38304 1.39003 1.50142 1.69636 2.39854 2.91375 3.11246 3.43053 3.92276 3.98667 4.21149 4.41923 4.47513 4.67555 4.71620 4.79651 4.81169 4.91506 4.96395 5.01917 5.12089 5.28844 5.46988 5.48169 5.54407 5.67824 5.70520 5.93496 6.06629 6.21150 6.74897 6.92923 7.38027 8.88327 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.042539 B = 0.008139 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.057694 B = 3439.431217 C = 3863.580518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.052 4.052 3 C -0.138 4.138 4 C -0.081 4.081 5 C -0.140 4.140 6 C -0.078 4.078 7 C -0.194 4.194 8 C 0.393 3.607 9 O -0.489 6.489 10 C 0.001 3.999 11 H 0.041 0.959 12 C -0.116 4.116 13 C -0.535 4.535 14 H 0.045 0.955 15 C 0.020 3.980 16 N -0.910 5.910 17 Si 0.955 3.045 18 H -0.275 1.275 19 H -0.273 1.273 20 H -0.276 1.276 21 H 0.067 0.933 22 H 0.086 0.914 23 H 0.061 0.939 24 H 0.155 0.845 25 H 0.165 0.835 26 H 0.156 0.844 27 H 0.127 0.873 28 H 0.074 0.926 29 H 0.019 0.981 30 H 0.044 0.956 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 14.256 -1.475 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.052 4.052 3 C -0.156 4.156 4 C -0.099 4.099 5 C -0.158 4.158 6 C -0.097 4.097 7 C -0.195 4.195 8 C 0.275 3.725 9 O -0.367 6.367 10 C -0.018 4.018 11 H 0.059 0.941 12 C -0.174 4.174 13 C -0.573 4.573 14 H 0.064 0.936 15 C -0.179 4.179 16 N -0.549 5.549 17 Si 0.781 3.219 18 H -0.201 1.201 19 H -0.198 1.198 20 H -0.201 1.201 21 H 0.086 0.914 22 H 0.105 0.895 23 H 0.080 0.920 24 H 0.173 0.827 25 H 0.183 0.817 26 H 0.173 0.827 27 H 0.144 0.856 28 H 0.093 0.907 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.653 14.093 -1.521 14.421 hybrid contribution -0.558 -1.253 0.347 1.415 sum 2.095 12.840 -1.174 13.063 Atomic orbital electron populations 1.20996 0.90713 1.03005 1.02639 1.20486 0.96947 0.92590 0.95164 1.21364 0.95123 0.97144 1.01944 1.21803 0.93873 0.99297 0.94930 1.21483 1.01581 0.91492 1.01246 1.21692 0.92539 1.00048 0.95386 1.20695 0.95603 0.94370 1.08807 1.23340 0.88636 0.91384 0.69173 1.90280 1.17951 1.90061 1.38434 1.19089 0.96015 0.90634 0.96082 0.94124 1.21501 0.98946 1.02132 0.94815 1.21295 0.97636 0.96028 1.42335 0.93636 1.25624 0.96630 1.00026 0.95652 1.69945 1.15495 1.20995 1.48468 0.85597 0.78920 0.78812 0.78595 1.20051 1.19799 1.20111 0.91438 0.89535 0.92026 0.82707 0.81724 0.82673 0.85555 0.90726 0.96188 0.93712 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 8.75 71.24 0.62 -3.13 16 2 C -0.05 -1.69 5.92 -19.55 -0.12 -1.81 16 3 C -0.14 -3.30 9.66 22.23 0.21 -3.09 16 4 C -0.08 -1.67 10.04 22.35 0.22 -1.45 16 5 C -0.14 -3.40 10.03 22.23 0.22 -3.17 16 6 C -0.08 -2.60 9.07 22.58 0.20 -2.39 16 7 C -0.19 -7.52 5.87 -20.15 -0.12 -7.64 16 8 C 0.39 18.89 6.16 28.03 0.17 19.06 16 9 O -0.49 -25.39 12.79 -2.94 -0.04 -25.43 16 10 C 0.00 0.04 1.83 -12.29 -0.02 0.01 16 11 H 0.04 2.18 7.02 -2.39 -0.02 2.16 16 12 C -0.12 -5.70 8.87 71.98 0.64 -5.06 16 13 C -0.54 -31.52 8.33 25.60 0.21 -31.31 16 14 H 0.05 2.81 7.03 -2.91 -0.02 2.79 16 15 C 0.02 1.14 5.30 84.65 0.45 1.59 16 16 N -0.91 -51.95 11.32 21.45 0.24 -51.71 16 17 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 18 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 22 H 0.09 2.09 8.04 -2.39 -0.02 2.07 16 23 H 0.06 2.40 5.83 -2.39 -0.01 2.39 16 24 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 25 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 26 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 27 H 0.13 4.36 6.16 -2.91 -0.02 4.34 16 28 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 29 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 1.86 7.45 -2.39 -0.02 1.84 16 31 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -66.88 261.18 6.06 -60.83 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.12 Total: 7.44 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 2.71 Total: -38.39 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.24 Total: -51.71 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.04 Total: -25.43 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.88 6.06 -60.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048258980.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.781 kcal (2) G-P(sol) polarization free energy of solvation -66.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds