Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48499 * 109.47364 * 269.99373 * 3 2 1 5 5 H 1.48501 * 109.47283 * 29.99838 * 3 2 1 6 6 H 1.48508 * 109.47380 * 149.99731 * 3 2 1 7 7 C 1.37880 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00602 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99208 * 359.73212 * 7 2 1 10 10 H 1.09001 * 109.60632 * 35.06076 * 9 7 2 11 11 C 1.52882 * 109.60193 * 274.58086 * 9 7 2 12 12 C 1.52148 * 110.79892 * 323.55956 * 11 9 7 13 13 C 1.51427 * 113.46273 * 292.46238 * 12 11 9 14 14 O 1.43139 * 110.93993 * 65.44579 * 13 12 11 15 15 C 1.36140 * 115.61042 * 273.25258 * 14 13 12 16 16 C 1.38905 * 119.79245 * 251.75017 * 15 14 13 17 17 C 1.38170 * 119.67580 * 177.74620 * 16 15 14 18 18 C 1.38283 * 120.23318 * 0.09464 * 17 16 15 19 19 C 1.38394 * 120.06702 * 0.38607 * 18 17 16 20 20 C 1.37948 * 120.36013 * 70.31436 * 15 14 13 21 21 H 0.97005 * 120.00244 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.21583 * 83.89848 * 11 9 7 23 23 H 1.08998 * 109.21546 * 203.22589 * 11 9 7 24 24 H 1.08999 * 108.68817 * 171.42777 * 12 11 9 25 25 H 1.09006 * 108.68656 * 53.49031 * 12 11 9 26 26 H 1.09005 * 109.17833 * 305.07651 * 13 12 11 27 27 H 1.08995 * 109.14274 * 185.80175 * 13 12 11 28 28 H 1.08004 * 120.16336 * 357.74659 * 16 15 14 29 29 H 1.08008 * 119.88542 * 180.02562 * 17 16 15 30 30 H 1.07997 * 119.96977 * 180.35711 * 18 17 16 31 31 H 1.08007 * 120.17737 * 179.88521 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0072 10 1 0.3379 -2.3972 -0.5792 11 6 0.9007 -2.8817 1.4453 12 6 2.0205 -2.4880 2.3972 13 6 3.2920 -3.2852 2.1949 14 8 3.8690 -3.0116 0.9138 15 6 3.4025 -3.7702 -0.1159 16 6 4.2134 -4.7503 -0.6737 17 6 3.7214 -5.5502 -1.6872 18 6 2.4287 -5.3757 -2.1465 19 6 1.6245 -4.3925 -1.5972 20 6 2.1189 -3.5908 -0.5884 21 1 -0.4851 0.8401 -0.0004 22 1 -0.0161 -2.3708 1.7394 23 1 0.7442 -3.9589 1.5020 24 1 1.6761 -2.6338 3.4210 25 1 2.2447 -1.4309 2.2544 26 1 3.0628 -4.3486 2.2647 27 1 4.0072 -3.0211 2.9738 28 1 5.2237 -4.8866 -0.3169 29 1 4.3489 -6.3136 -2.1230 30 1 2.0465 -6.0071 -2.9349 31 1 0.6153 -4.2535 -1.9559 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062567388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = -21.419641 kcal Electronic energy + Delta-G solvation = -15031.487294 eV Core-core repulsion = 12663.661087 eV Total energy + Delta-G solvation = -2367.826207 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.71023 -36.67991 -34.69999 -31.86197 -30.86264 -29.58136 -26.89691 -24.99852 -23.38871 -21.88665 -20.34769 -19.28130 -17.19627 -16.04437 -15.51146 -14.89041 -14.45642 -14.23081 -13.83883 -13.16616 -12.88363 -12.55273 -12.30248 -11.88287 -11.60621 -11.43246 -10.90864 -10.86169 -10.60625 -10.28412 -10.09330 -9.68386 -9.19905 -9.10324 -8.77263 -8.37258 -8.10477 -7.61673 -5.98284 -3.96032 1.92897 2.09751 3.34279 3.40867 3.46598 4.19575 4.49077 4.74338 5.36074 5.49025 5.57394 5.66488 5.73025 5.87773 5.98825 6.07483 6.15663 6.27734 6.44090 6.60773 6.65878 6.76590 6.97727 7.12022 7.20051 7.23619 7.38546 7.46871 7.65491 7.83443 8.02041 8.34190 8.48656 9.12119 9.64456 11.11963 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030868 B = 0.011492 C = 0.010730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.865330 B = 2435.928028 C = 2608.979966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.072 0.928 9 C 0.071 3.929 10 H 0.057 0.943 11 C -0.096 4.096 12 C -0.141 4.141 13 C 0.079 3.921 14 O -0.316 6.316 15 C 0.105 3.895 16 C -0.146 4.146 17 C -0.134 4.134 18 C -0.136 4.136 19 C -0.117 4.117 20 C -0.067 4.067 21 H 0.259 0.741 22 H 0.060 0.940 23 H 0.021 0.979 24 H 0.042 0.958 25 H 0.092 0.908 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 -8.408 1.123 9.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.090 0.910 9 C 0.052 3.948 10 H 0.076 0.924 11 C -0.134 4.134 12 C -0.179 4.179 13 C 0.004 3.996 14 O -0.233 6.233 15 C 0.061 3.939 16 C -0.164 4.164 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.135 4.135 20 C -0.068 4.068 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.111 0.889 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.189 -8.128 1.142 9.215 hybrid contribution 0.235 0.855 -0.032 0.888 sum 4.424 -7.273 1.110 8.585 Atomic orbital electron populations 1.69936 1.05888 1.26462 1.51371 1.24970 0.94786 0.98988 0.95428 0.86646 0.80043 0.83586 0.78139 1.20803 1.21458 1.19679 1.21235 0.93738 0.89035 1.48783 0.90990 1.18207 0.94784 0.90162 0.91601 0.92442 1.21312 0.97683 0.96579 0.97866 1.21577 0.95009 1.03869 0.97422 1.22339 0.95865 0.97880 0.83537 1.86259 1.62877 1.59010 1.15138 1.18473 0.92359 0.91402 0.91650 1.21206 1.00194 0.95267 0.99747 1.20737 0.95953 1.00233 0.98323 1.21046 0.94538 0.99307 1.00569 1.21023 0.99795 0.95728 0.96927 1.21139 0.95022 0.95595 0.95055 0.93127 0.92116 0.96029 0.93909 0.88922 0.94379 0.90159 0.86513 0.86888 0.86974 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 12.96 55.43 0.72 -24.95 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.49 -13.28 5.56 -34.44 -0.19 -13.47 16 8 H 0.07 2.03 6.02 -52.49 -0.32 1.71 16 9 C 0.07 1.76 2.38 -92.51 -0.22 1.54 16 10 H 0.06 1.56 7.41 -51.93 -0.38 1.17 16 11 C -0.10 -2.16 5.44 -27.23 -0.15 -2.31 16 12 C -0.14 -2.90 5.29 -27.96 -0.15 -3.05 16 13 C 0.08 1.47 6.49 36.36 0.24 1.70 16 14 O -0.32 -6.88 8.15 -20.19 -0.16 -7.05 16 15 C 0.10 2.23 5.24 -39.44 -0.21 2.02 16 16 C -0.15 -2.64 10.01 -39.36 -0.39 -3.03 16 17 C -0.13 -2.18 10.03 -39.59 -0.40 -2.58 16 18 C -0.14 -2.28 10.05 -39.51 -0.40 -2.68 16 19 C -0.12 -2.28 9.69 -39.60 -0.38 -2.66 16 20 C -0.07 -1.50 4.64 -104.34 -0.48 -1.98 16 21 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 23 H 0.02 0.44 7.89 -51.93 -0.41 0.03 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 2.17 6.51 -51.93 -0.34 1.83 16 26 H 0.04 0.66 7.90 -51.93 -0.41 0.25 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.12 2.19 7.99 -52.48 -0.42 1.77 16 LS Contribution 252.87 15.07 3.81 3.81 Total: -1.00 -29.01 252.87 -7.44 -36.45 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -3.95 Total: 0.08 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -2.83 Total: -24.98 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.72 Total: -24.95 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.16 Total: -7.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.01 -7.44 -36.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062567388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.027 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds