Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48499 * 109.47364 * 269.99373 * 3 2 1 5 5 H 1.48501 * 109.47283 * 29.99838 * 3 2 1 6 6 H 1.48508 * 109.47380 * 149.99731 * 3 2 1 7 7 C 1.37880 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00602 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99208 * 359.73212 * 7 2 1 10 10 H 1.09001 * 109.60632 * 35.06076 * 9 7 2 11 11 C 1.52882 * 109.60193 * 274.58086 * 9 7 2 12 12 C 1.52148 * 110.79892 * 323.55956 * 11 9 7 13 13 C 1.51427 * 113.46273 * 292.46238 * 12 11 9 14 14 O 1.43139 * 110.93993 * 65.44579 * 13 12 11 15 15 C 1.36140 * 115.61042 * 273.25258 * 14 13 12 16 16 C 1.38905 * 119.79245 * 251.75017 * 15 14 13 17 17 C 1.38170 * 119.67580 * 177.74620 * 16 15 14 18 18 C 1.38283 * 120.23318 * 0.09464 * 17 16 15 19 19 C 1.38394 * 120.06702 * 0.38607 * 18 17 16 20 20 C 1.37948 * 120.36013 * 70.31436 * 15 14 13 21 21 H 0.97005 * 120.00244 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.21583 * 83.89848 * 11 9 7 23 23 H 1.08998 * 109.21546 * 203.22589 * 11 9 7 24 24 H 1.08999 * 108.68817 * 171.42777 * 12 11 9 25 25 H 1.09006 * 108.68656 * 53.49031 * 12 11 9 26 26 H 1.09005 * 109.17833 * 305.07651 * 13 12 11 27 27 H 1.08995 * 109.14274 * 185.80175 * 13 12 11 28 28 H 1.08004 * 120.16336 * 357.74659 * 16 15 14 29 29 H 1.08008 * 119.88542 * 180.02562 * 17 16 15 30 30 H 1.07997 * 119.96977 * 180.35711 * 18 17 16 31 31 H 1.08007 * 120.17737 * 179.88521 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0072 10 1 0.3379 -2.3972 -0.5792 11 6 0.9007 -2.8817 1.4453 12 6 2.0205 -2.4880 2.3972 13 6 3.2920 -3.2852 2.1949 14 8 3.8690 -3.0116 0.9138 15 6 3.4025 -3.7702 -0.1159 16 6 4.2134 -4.7503 -0.6737 17 6 3.7214 -5.5502 -1.6872 18 6 2.4287 -5.3757 -2.1465 19 6 1.6245 -4.3925 -1.5972 20 6 2.1189 -3.5908 -0.5884 21 1 -0.4851 0.8401 -0.0004 22 1 -0.0161 -2.3708 1.7394 23 1 0.7442 -3.9589 1.5020 24 1 1.6761 -2.6338 3.4210 25 1 2.2447 -1.4309 2.2544 26 1 3.0628 -4.3486 2.2647 27 1 4.0072 -3.0211 2.9738 28 1 5.2237 -4.8866 -0.3169 29 1 4.3489 -6.3136 -2.1230 30 1 2.0465 -6.0071 -2.9349 31 1 0.6153 -4.2535 -1.9559 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062567388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = -37.581025 kcal Electronic energy + Delta-G solvation = -15032.188104 eV Core-core repulsion = 12663.661087 eV Total energy + Delta-G solvation = -2368.527017 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.25529 -38.14423 -36.50933 -33.83167 -32.42669 -31.04421 -28.58904 -26.87934 -25.09520 -23.36627 -21.84552 -21.07045 -18.80325 -17.88204 -17.12680 -16.67130 -16.00448 -15.88071 -15.37280 -14.78617 -14.45117 -14.31235 -14.07459 -13.53367 -13.24990 -12.96418 -12.76578 -12.63619 -12.22648 -12.14228 -11.77887 -11.39974 -10.96215 -10.92052 -10.60485 -10.41262 -9.56586 -9.13541 -8.09274 -6.11710 0.49943 0.64831 1.38178 1.39713 1.50563 2.44725 2.77088 3.21981 3.28401 4.11788 4.16278 4.25636 4.28057 4.40697 4.46687 4.59050 4.66967 4.82358 4.84315 5.01967 5.05271 5.22999 5.37671 5.51156 5.59546 5.64675 5.69858 5.78936 5.89220 6.02549 6.09978 6.43579 6.85148 6.99179 7.50748 9.00612 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030868 B = 0.011492 C = 0.010730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.865330 B = 2435.928028 C = 2608.979966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.943 3.057 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.487 4.487 8 H 0.060 0.940 9 C 0.070 3.930 10 H 0.018 0.982 11 C -0.091 4.091 12 C -0.137 4.137 13 C 0.077 3.923 14 O -0.338 6.338 15 C 0.082 3.918 16 C -0.146 4.146 17 C -0.119 4.119 18 C -0.128 4.128 19 C -0.133 4.133 20 C -0.103 4.103 21 H 0.258 0.742 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.150 0.850 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.141 -10.228 0.871 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.187 4.187 3 Si 0.770 3.230 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.525 4.525 8 H 0.078 0.922 9 C 0.051 3.949 10 H 0.036 0.964 11 C -0.129 4.129 12 C -0.175 4.175 13 C 0.003 3.997 14 O -0.255 6.255 15 C 0.038 3.962 16 C -0.165 4.165 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.151 4.151 20 C -0.104 4.104 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.129 0.871 28 H 0.159 0.841 29 H 0.175 0.825 30 H 0.167 0.833 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.133 -9.955 0.891 11.726 hybrid contribution -0.358 1.306 0.004 1.355 sum 5.775 -8.648 0.895 10.437 Atomic orbital electron populations 1.70054 1.07078 1.26908 1.53006 1.25636 0.95483 1.01909 0.95699 0.85774 0.78986 0.80265 0.78023 1.20668 1.20978 1.19322 1.21373 0.93171 0.90383 1.47572 0.92213 1.18037 0.93501 0.90843 0.92532 0.96371 1.21185 0.97431 0.97085 0.97174 1.21514 0.95565 1.02054 0.98369 1.22499 0.95438 0.98460 0.83346 1.86214 1.63149 1.60011 1.16158 1.18739 0.92477 0.92710 0.92254 1.21515 1.00810 0.94355 0.99783 1.21258 0.95925 0.99882 0.96654 1.21433 0.94421 0.98171 1.00521 1.21169 1.00418 0.96621 0.96877 1.20982 0.95751 0.96448 0.97176 0.93306 0.94764 0.94498 0.91076 0.92287 0.92707 0.87089 0.84149 0.82461 0.83275 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 12.96 21.45 0.28 -55.07 16 2 C 0.01 0.55 5.46 84.66 0.46 1.02 16 3 Si 0.94 45.45 29.54 68.60 2.03 47.48 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.49 -27.25 5.56 25.60 0.14 -27.11 16 8 H 0.06 3.45 6.02 -2.91 -0.02 3.43 16 9 C 0.07 3.59 2.38 -12.02 -0.03 3.56 16 10 H 0.02 1.04 7.41 -2.39 -0.02 1.03 16 11 C -0.09 -4.19 5.44 30.27 0.16 -4.02 16 12 C -0.14 -5.63 5.29 29.80 0.16 -5.47 16 13 C 0.08 2.75 6.49 71.47 0.46 3.21 16 14 O -0.34 -14.41 8.15 -95.15 -0.78 -15.19 16 15 C 0.08 3.37 5.24 22.36 0.12 3.49 16 16 C -0.15 -4.82 10.01 22.41 0.22 -4.60 16 17 C -0.12 -3.32 10.03 22.26 0.22 -3.10 16 18 C -0.13 -3.83 10.05 22.32 0.22 -3.60 16 19 C -0.13 -5.11 9.69 22.25 0.22 -4.89 16 20 C -0.10 -4.60 4.64 -19.68 -0.09 -4.69 16 21 H 0.26 14.70 8.31 -92.70 -0.77 13.92 16 22 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.04 1.54 7.89 -2.39 -0.02 1.52 16 24 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.06 2.81 6.51 -2.38 -0.02 2.79 16 26 H 0.05 1.77 7.90 -2.38 -0.02 1.75 16 27 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 28 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 29 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.12 4.36 7.99 -2.91 -0.02 4.33 16 Total: -1.00 -64.85 252.87 4.91 -59.94 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.11 Total: 9.06 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 2.28 Total: -46.22 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.78 Total: -15.19 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -64.85 4.91 -59.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062567388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.357 kcal (2) G-P(sol) polarization free energy of solvation -64.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds