Wall clock time and date at job start Mon Mar 30 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99730 * 2 1 4 4 H 1.48504 * 109.46589 * 239.99419 * 3 2 1 5 5 H 1.48491 * 109.47501 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47235 * 120.00140 * 3 2 1 7 7 C 1.37873 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00088 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.59906 * 325.20369 * 9 7 2 11 11 C 1.52867 * 109.60065 * 85.68295 * 9 7 2 12 12 C 1.52146 * 110.80118 * 36.45413 * 11 9 7 13 13 C 1.51432 * 113.45704 * 67.52855 * 12 11 9 14 14 O 1.43132 * 110.94723 * 294.53867 * 13 12 11 15 15 C 1.36148 * 115.60321 * 86.75685 * 14 13 12 16 16 C 1.38906 * 119.81558 * 109.47543 * 15 14 13 17 17 C 1.38160 * 119.67992 * 181.00435 * 16 15 14 18 18 C 1.38290 * 120.23298 * 0.07506 * 17 16 15 19 19 C 1.38393 * 120.06833 * 359.55590 * 18 17 16 20 20 C 1.37942 * 120.35799 * 289.70812 * 15 14 13 21 21 H 0.96999 * 120.00136 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.21439 * 276.10779 * 11 9 7 23 23 H 1.09000 * 109.21018 * 156.79239 * 11 9 7 24 24 H 1.08999 * 108.68695 * 306.50370 * 12 11 9 25 25 H 1.08999 * 108.68667 * 188.55824 * 12 11 9 26 26 H 1.09002 * 109.18378 * 54.92382 * 13 12 11 27 27 H 1.09003 * 109.17998 * 174.16216 * 13 12 11 28 28 H 1.08003 * 120.16005 * 0.98974 * 16 15 14 29 29 H 1.07999 * 119.88601 * 180.02562 * 17 16 15 30 30 H 1.07997 * 119.96930 * 179.53383 * 18 17 16 31 31 H 1.08000 * 120.17942 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.3377 -2.3940 0.5861 11 6 0.9012 -2.8894 -1.4355 12 6 2.0214 -2.5010 -2.3890 13 6 3.2926 -3.2973 -2.1817 14 8 3.8694 -3.0166 -0.9022 15 6 3.4025 -3.7695 0.1316 16 6 4.2217 -4.7294 0.7121 17 6 3.7380 -5.5061 1.7473 18 6 2.4443 -5.3312 2.2034 19 6 1.6309 -4.3696 1.6298 20 6 2.1187 -3.5876 0.6024 21 1 -0.4850 0.8400 -0.0004 22 1 -0.0155 -2.3799 -1.7326 23 1 0.7444 -3.9668 -1.4863 24 1 2.2457 -1.4432 -2.2519 25 1 1.6773 -2.6524 -3.4121 26 1 3.0634 -4.3611 -2.2458 27 1 4.0086 -3.0385 -2.9619 28 1 5.2318 -4.8680 0.3559 29 1 4.3723 -6.2531 2.2013 30 1 2.0681 -5.9459 3.0078 31 1 0.6201 -4.2317 1.9844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062567390.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:30 Heat of formation + Delta-G solvation = -21.553173 kcal Electronic energy + Delta-G solvation = -15030.160877 eV Core-core repulsion = 12662.328880 eV Total energy + Delta-G solvation = -2367.831997 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.70514 -36.68334 -34.69829 -31.86233 -30.85847 -29.58307 -26.89423 -24.99756 -23.38849 -21.88297 -20.34527 -19.28106 -17.19769 -16.04368 -15.51370 -14.88801 -14.45841 -14.22747 -13.83749 -13.16912 -12.87985 -12.54466 -12.30392 -11.88531 -11.59861 -11.43200 -10.92790 -10.82801 -10.61982 -10.28589 -10.10443 -9.68070 -9.19929 -9.10508 -8.77292 -8.37503 -8.10157 -7.61113 -5.98114 -3.96001 1.93746 2.10010 3.36308 3.40060 3.44932 4.20660 4.49010 4.72426 5.36139 5.49382 5.57665 5.66494 5.73401 5.87861 5.98952 6.07788 6.15886 6.28124 6.44423 6.61051 6.66028 6.76777 6.98083 7.12291 7.20268 7.23802 7.38957 7.47337 7.65603 7.83586 8.02079 8.33931 8.48558 9.11760 9.64406 11.12083 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030625 B = 0.011530 C = 0.010749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.062480 B = 2427.908577 C = 2604.208716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.490 4.490 8 H 0.071 0.929 9 C 0.072 3.928 10 H 0.057 0.943 11 C -0.096 4.096 12 C -0.141 4.141 13 C 0.078 3.922 14 O -0.316 6.316 15 C 0.105 3.895 16 C -0.145 4.145 17 C -0.134 4.134 18 C -0.137 4.137 19 C -0.116 4.116 20 C -0.068 4.068 21 H 0.260 0.740 22 H 0.060 0.940 23 H 0.021 0.979 24 H 0.092 0.908 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -8.361 -1.041 9.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.528 4.528 8 H 0.089 0.911 9 C 0.053 3.947 10 H 0.076 0.924 11 C -0.135 4.135 12 C -0.179 4.179 13 C 0.004 3.996 14 O -0.232 6.232 15 C 0.061 3.939 16 C -0.164 4.164 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.134 4.134 20 C -0.069 4.069 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.040 0.960 24 H 0.111 0.889 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.181 -8.077 -1.053 9.156 hybrid contribution 0.252 0.849 0.016 0.885 sum 4.433 -7.229 -1.036 8.543 Atomic orbital electron populations 1.69930 1.05880 1.26581 1.51271 1.24970 0.94793 0.98981 0.95415 0.86686 0.79558 0.83205 0.78782 1.20204 1.21544 1.20312 1.21192 0.93695 0.89041 1.48920 0.91062 1.18200 0.94789 0.90116 0.91590 0.92432 1.21312 0.97671 0.96576 0.97896 1.21574 0.95005 1.03873 0.97412 1.22337 0.95873 0.97851 0.83588 1.86268 1.62903 1.59033 1.15032 1.18472 0.92297 0.91656 0.91485 1.21187 1.00130 0.95691 0.99385 1.20731 0.95976 1.00408 0.98114 1.21046 0.94480 0.99454 1.00498 1.21021 0.99763 0.96002 0.96649 1.21142 0.95154 0.95515 0.95073 0.93066 0.92133 0.96032 0.88918 0.93914 0.94374 0.90171 0.86520 0.86891 0.86979 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 12.96 55.43 0.72 -24.95 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.49 -13.30 5.56 -34.44 -0.19 -13.49 16 8 H 0.07 2.00 6.02 -52.49 -0.32 1.69 16 9 C 0.07 1.77 2.39 -92.52 -0.22 1.55 16 10 H 0.06 1.56 7.40 -51.93 -0.38 1.18 16 11 C -0.10 -2.17 5.44 -27.23 -0.15 -2.31 16 12 C -0.14 -2.90 5.29 -27.96 -0.15 -3.05 16 13 C 0.08 1.46 6.48 36.37 0.24 1.70 16 14 O -0.32 -6.86 8.15 -20.21 -0.16 -7.03 16 15 C 0.10 2.22 5.24 -39.44 -0.21 2.02 16 16 C -0.15 -2.64 10.01 -39.36 -0.39 -3.03 16 17 C -0.13 -2.18 10.03 -39.59 -0.40 -2.58 16 18 C -0.14 -2.29 10.05 -39.51 -0.40 -2.69 16 19 C -0.12 -2.28 9.69 -39.60 -0.38 -2.66 16 20 C -0.07 -1.52 4.64 -104.34 -0.48 -2.00 16 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 22 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 23 H 0.02 0.44 7.89 -51.93 -0.41 0.03 16 24 H 0.09 2.17 6.51 -51.93 -0.34 1.83 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.66 7.90 -51.93 -0.41 0.25 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.12 2.19 7.98 -52.49 -0.42 1.77 16 LS Contribution 252.86 15.07 3.81 3.81 Total: -1.00 -28.96 252.86 -7.44 -36.40 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -3.95 Total: 0.12 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -2.83 Total: -25.01 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.72 Total: -24.95 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.16 Total: -7.03 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.96 -7.44 -36.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062567390.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.846 kcal (2) G-P(sol) polarization free energy of solvation -28.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds