Wall clock time and date at job start Mon Mar 30 2020 02:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99730 * 2 1 4 4 H 1.48504 * 109.46589 * 239.99419 * 3 2 1 5 5 H 1.48491 * 109.47501 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47235 * 120.00140 * 3 2 1 7 7 C 1.37873 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00088 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.59906 * 325.20369 * 9 7 2 11 11 C 1.52867 * 109.60065 * 85.68295 * 9 7 2 12 12 C 1.52146 * 110.80118 * 36.45413 * 11 9 7 13 13 C 1.51432 * 113.45704 * 67.52855 * 12 11 9 14 14 O 1.43132 * 110.94723 * 294.53867 * 13 12 11 15 15 C 1.36148 * 115.60321 * 86.75685 * 14 13 12 16 16 C 1.38906 * 119.81558 * 109.47543 * 15 14 13 17 17 C 1.38160 * 119.67992 * 181.00435 * 16 15 14 18 18 C 1.38290 * 120.23298 * 0.07506 * 17 16 15 19 19 C 1.38393 * 120.06833 * 359.55590 * 18 17 16 20 20 C 1.37942 * 120.35799 * 289.70812 * 15 14 13 21 21 H 0.96999 * 120.00136 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.21439 * 276.10779 * 11 9 7 23 23 H 1.09000 * 109.21018 * 156.79239 * 11 9 7 24 24 H 1.08999 * 108.68695 * 306.50370 * 12 11 9 25 25 H 1.08999 * 108.68667 * 188.55824 * 12 11 9 26 26 H 1.09002 * 109.18378 * 54.92382 * 13 12 11 27 27 H 1.09003 * 109.17998 * 174.16216 * 13 12 11 28 28 H 1.08003 * 120.16005 * 0.98974 * 16 15 14 29 29 H 1.07999 * 119.88601 * 180.02562 * 17 16 15 30 30 H 1.07997 * 119.96930 * 179.53383 * 18 17 16 31 31 H 1.08000 * 120.17942 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.3377 -2.3940 0.5861 11 6 0.9012 -2.8894 -1.4355 12 6 2.0214 -2.5010 -2.3890 13 6 3.2926 -3.2973 -2.1817 14 8 3.8694 -3.0166 -0.9022 15 6 3.4025 -3.7695 0.1316 16 6 4.2217 -4.7294 0.7121 17 6 3.7380 -5.5061 1.7473 18 6 2.4443 -5.3312 2.2034 19 6 1.6309 -4.3696 1.6298 20 6 2.1187 -3.5876 0.6024 21 1 -0.4850 0.8400 -0.0004 22 1 -0.0155 -2.3799 -1.7326 23 1 0.7444 -3.9668 -1.4863 24 1 2.2457 -1.4432 -2.2519 25 1 1.6773 -2.6524 -3.4121 26 1 3.0634 -4.3611 -2.2458 27 1 4.0086 -3.0385 -2.9619 28 1 5.2318 -4.8680 0.3559 29 1 4.3723 -6.2531 2.2013 30 1 2.0681 -5.9459 3.0078 31 1 0.6201 -4.2317 1.9844 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062567390.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:30 Heat of formation + Delta-G solvation = -37.667283 kcal Electronic energy + Delta-G solvation = -15030.859637 eV Core-core repulsion = 12662.328880 eV Total energy + Delta-G solvation = -2368.530758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.25130 -38.14888 -36.50787 -33.83186 -32.42424 -31.04783 -28.58696 -26.87834 -25.09574 -23.36410 -21.84491 -21.07138 -18.80461 -17.88029 -17.12977 -16.67321 -16.00611 -15.87944 -15.37009 -14.78631 -14.44848 -14.30688 -14.07640 -13.53688 -13.24427 -12.96372 -12.73740 -12.65743 -12.24215 -12.13899 -11.78426 -11.39905 -10.96068 -10.92187 -10.60000 -10.41999 -9.56519 -9.13199 -8.09042 -6.11654 0.50533 0.64810 1.39695 1.40454 1.48522 2.44799 2.77993 3.21139 3.27372 4.11715 4.16272 4.25920 4.28078 4.40807 4.46707 4.59188 4.66959 4.82476 4.84516 5.02067 5.05416 5.23052 5.37741 5.51261 5.59564 5.64760 5.69925 5.78810 5.89390 6.02620 6.10108 6.43516 6.84724 6.98914 7.50745 9.00624 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.030625 B = 0.011530 C = 0.010749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.062480 B = 2427.908577 C = 2604.208716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.488 4.488 8 H 0.059 0.941 9 C 0.070 3.930 10 H 0.018 0.982 11 C -0.091 4.091 12 C -0.137 4.137 13 C 0.077 3.923 14 O -0.337 6.337 15 C 0.082 3.918 16 C -0.146 4.146 17 C -0.119 4.119 18 C -0.128 4.128 19 C -0.132 4.132 20 C -0.104 4.104 21 H 0.258 0.742 22 H 0.033 0.967 23 H 0.036 0.964 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.141 0.859 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.165 -10.150 -0.779 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.187 4.187 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.526 4.526 8 H 0.078 0.922 9 C 0.051 3.949 10 H 0.036 0.964 11 C -0.129 4.129 12 C -0.175 4.175 13 C 0.002 3.998 14 O -0.254 6.254 15 C 0.038 3.962 16 C -0.165 4.165 17 C -0.137 4.137 18 C -0.146 4.146 19 C -0.151 4.151 20 C -0.104 4.104 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.129 0.871 28 H 0.159 0.841 29 H 0.175 0.825 30 H 0.167 0.833 31 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.153 -9.873 -0.794 11.660 hybrid contribution -0.349 1.290 -0.020 1.337 sum 5.805 -8.583 -0.814 10.393 Atomic orbital electron populations 1.70051 1.07073 1.26984 1.52918 1.25638 0.95489 1.01909 0.95676 0.85822 0.78474 0.79904 0.78777 1.19512 1.21150 1.20289 1.21338 0.93153 0.90386 1.47714 0.92240 1.18030 0.93505 0.90800 0.92522 0.96360 1.21186 0.97424 0.97081 0.97206 1.21509 0.95570 1.02044 0.98352 1.22496 0.95443 0.98421 0.83411 1.86224 1.63160 1.60022 1.16038 1.18736 0.92406 0.92949 0.92087 1.21501 1.00740 0.94788 0.99429 1.21253 0.95978 0.99946 0.96541 1.21433 0.94353 0.98284 1.00519 1.21169 1.00404 0.96907 0.96588 1.20984 0.95882 0.96418 0.97132 0.93296 0.94777 0.94499 0.92309 0.91095 0.92703 0.87084 0.84141 0.82469 0.83291 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.34 12.96 21.45 0.28 -55.07 16 2 C 0.01 0.57 5.46 84.65 0.46 1.03 16 3 Si 0.94 45.45 29.54 68.60 2.03 47.48 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.49 -27.30 5.56 25.60 0.14 -27.16 16 8 H 0.06 3.43 6.02 -2.91 -0.02 3.41 16 9 C 0.07 3.61 2.39 -12.02 -0.03 3.59 16 10 H 0.02 1.05 7.40 -2.39 -0.02 1.03 16 11 C -0.09 -4.20 5.44 30.27 0.16 -4.04 16 12 C -0.14 -5.62 5.29 29.80 0.16 -5.46 16 13 C 0.08 2.73 6.48 71.47 0.46 3.20 16 14 O -0.34 -14.35 8.15 -95.24 -0.78 -15.12 16 15 C 0.08 3.37 5.24 22.36 0.12 3.49 16 16 C -0.15 -4.83 10.01 22.41 0.22 -4.60 16 17 C -0.12 -3.34 10.03 22.26 0.22 -3.11 16 18 C -0.13 -3.85 10.05 22.32 0.22 -3.63 16 19 C -0.13 -5.11 9.69 22.26 0.22 -4.90 16 20 C -0.10 -4.63 4.64 -19.68 -0.09 -4.72 16 21 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 22 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.04 1.54 7.89 -2.39 -0.02 1.52 16 24 H 0.06 2.80 6.51 -2.39 -0.02 2.79 16 25 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.05 1.77 7.90 -2.39 -0.02 1.75 16 27 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 28 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.12 4.36 7.98 -2.91 -0.02 4.34 16 Total: -1.00 -64.74 252.86 4.91 -59.83 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.11 Total: 9.20 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 2.28 Total: -46.32 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.78 Total: -15.12 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -64.74 4.91 -59.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062567390.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.162 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds