Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48506 * 109.46788 * 239.99678 * 3 2 1 5 5 H 1.48493 * 109.47080 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47263 * 119.99832 * 3 2 1 7 7 C 1.37883 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47116 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46687 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.83344 * 308.69890 * 11 10 9 13 13 C 1.54711 * 110.96635 * 72.43244 * 11 10 9 14 14 O 1.43784 * 102.77832 * 92.94044 * 13 11 10 15 15 C 1.36135 * 109.20195 * 27.88876 * 14 13 11 16 16 C 1.39288 * 129.89901 * 161.19260 * 15 14 13 17 17 C 1.37926 * 120.23937 * 179.06515 * 16 15 14 18 18 C 1.38291 * 120.35256 * 359.97438 * 17 16 15 19 19 C 1.38342 * 119.76537 * 0.18938 * 18 17 16 20 20 C 1.37740 * 119.98126 * 359.97438 * 19 18 17 21 21 H 0.97006 * 120.00421 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46881 * 59.99531 * 9 7 2 23 23 H 1.09001 * 109.46924 * 299.99614 * 9 7 2 24 24 H 1.09001 * 109.46586 * 60.00237 * 10 9 7 25 25 H 1.08993 * 109.47145 * 300.00158 * 10 9 7 26 26 H 1.08999 * 110.74837 * 211.26420 * 13 11 10 27 27 H 1.08993 * 110.74960 * 334.43559 * 13 11 10 28 28 H 1.08001 * 119.87958 * 359.04526 * 16 15 14 29 29 H 1.07996 * 119.82725 * 179.97438 * 17 16 15 30 30 H 1.07994 * 120.11568 * 180.16350 * 18 17 16 31 31 H 1.08000 * 120.01403 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 1 0.7349 -5.0041 0.7965 13 6 0.8251 -5.2488 -1.3758 14 8 1.8196 -6.0325 -2.0572 15 6 2.5511 -6.7231 -1.1400 16 6 3.3611 -7.8443 -1.3042 17 6 4.0355 -8.3780 -0.2259 18 6 3.9145 -7.8053 1.0271 19 6 3.1092 -6.6936 1.1992 20 6 2.4322 -6.1610 0.1244 21 1 -0.4851 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8717 -3.6044 0.8906 25 1 2.8718 -3.6044 -0.8894 26 1 -0.1003 -5.8134 -1.2622 27 1 0.6418 -4.3114 -1.9007 28 1 3.4612 -8.2976 -2.2794 29 1 4.6614 -9.2477 -0.3607 30 1 4.4463 -8.2247 1.8682 31 1 3.0121 -6.2429 2.1758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062719621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = -23.931485 kcal Electronic energy + Delta-G solvation = -14055.841119 eV Core-core repulsion = 11687.905990 eV Total energy + Delta-G solvation = -2367.935129 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.91450 -37.20501 -34.65649 -32.59018 -30.47067 -29.72456 -28.19441 -25.03688 -23.10374 -22.07789 -21.22099 -19.83742 -16.93575 -16.53127 -16.24923 -15.69013 -15.33629 -14.47915 -13.92058 -13.41835 -13.14889 -13.03462 -12.44449 -12.22243 -12.14947 -11.54676 -11.28860 -11.02199 -10.83763 -10.77958 -10.49212 -10.32709 -9.73851 -9.39521 -9.16422 -8.67154 -8.36408 -7.90194 -6.02193 -4.04502 1.46661 1.53690 3.32921 3.37097 3.40024 3.56534 3.89318 4.44803 4.77499 4.89881 5.09426 5.15747 5.33616 5.39113 5.46380 5.51449 5.73625 5.90978 6.01868 6.17949 6.22382 6.42761 6.54325 6.57972 6.68592 6.76432 6.83323 7.04905 7.42827 7.62788 7.75703 7.96761 8.39926 9.01756 9.59764 11.09027 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.049126 B = 0.006149 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.824646 B = 4552.161534 C = 4775.253784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.097 4.097 11 C -0.079 4.079 12 H 0.093 0.907 13 C 0.053 3.947 14 O -0.306 6.306 15 C 0.106 3.894 16 C -0.146 4.146 17 C -0.094 4.094 18 C -0.155 4.155 19 C -0.071 4.071 20 C -0.156 4.156 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.347 -14.588 0.336 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.097 4.097 12 H 0.111 0.889 13 C -0.021 4.021 14 O -0.220 6.220 15 C 0.061 3.939 16 C -0.165 4.165 17 C -0.112 4.112 18 C -0.173 4.173 19 C -0.089 4.089 20 C -0.157 4.157 21 H 0.071 0.929 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.190 -14.447 0.086 15.043 hybrid contribution 0.357 1.062 0.158 1.131 sum 4.547 -13.386 0.243 14.139 Atomic orbital electron populations 1.69943 1.06043 1.26768 1.50776 1.25009 0.94848 0.99239 0.95241 0.86654 0.79599 0.83079 0.78665 1.20218 1.21255 1.20234 1.21199 0.93050 0.91017 1.50737 0.92742 1.19152 0.93914 0.91255 0.97219 1.21638 0.98887 0.91807 1.01090 1.21618 0.96377 0.94234 0.97501 0.88917 1.24028 0.89662 0.95732 0.92674 1.86815 1.45770 1.57413 1.31965 1.19685 0.93740 0.92065 0.88453 1.20201 1.00963 0.95306 1.00021 1.20770 0.98687 0.99554 0.92218 1.20970 1.01212 0.97746 0.97395 1.20351 0.95371 0.95290 0.97916 1.21051 1.02549 0.97899 0.94220 0.92917 0.96454 0.96468 0.92676 0.92871 0.91141 0.86509 0.85900 0.85664 0.85898 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.54 4.86 -27.88 -0.14 0.41 16 10 C -0.10 -2.03 4.64 -26.73 -0.12 -2.15 16 11 C -0.08 -1.39 3.10 -90.40 -0.28 -1.67 16 12 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 13 C 0.05 0.89 7.42 38.06 0.28 1.18 16 14 O -0.31 -5.43 11.11 -20.17 -0.22 -5.65 16 15 C 0.11 1.76 7.03 -38.95 -0.27 1.49 16 16 C -0.15 -2.03 10.06 -39.31 -0.40 -2.43 16 17 C -0.09 -1.13 10.02 -39.68 -0.40 -1.52 16 18 C -0.16 -1.90 10.07 -39.52 -0.40 -2.30 16 19 C -0.07 -1.02 10.03 -39.73 -0.40 -1.42 16 20 C -0.16 -2.58 5.63 -104.09 -0.59 -3.17 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.02 0.45 6.90 -51.93 -0.36 0.09 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.05 1.16 8.12 -51.93 -0.42 0.74 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.12 2.04 6.70 -51.93 -0.35 1.69 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 265.24 15.07 4.00 4.00 Total: -1.00 -30.55 265.24 -7.68 -38.23 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.05 Total: -2.16 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -3.12 Total: -25.13 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.74 Total: -25.97 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.22 Total: -5.65 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.55 -7.68 -38.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062719621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.295 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds