Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48506 * 109.46788 * 239.99678 * 3 2 1 5 5 H 1.48493 * 109.47080 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47263 * 119.99832 * 3 2 1 7 7 C 1.37883 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00113 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47116 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46687 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.83344 * 308.69890 * 11 10 9 13 13 C 1.54711 * 110.96635 * 72.43244 * 11 10 9 14 14 O 1.43784 * 102.77832 * 92.94044 * 13 11 10 15 15 C 1.36135 * 109.20195 * 27.88876 * 14 13 11 16 16 C 1.39288 * 129.89901 * 161.19260 * 15 14 13 17 17 C 1.37926 * 120.23937 * 179.06515 * 16 15 14 18 18 C 1.38291 * 120.35256 * 359.97438 * 17 16 15 19 19 C 1.38342 * 119.76537 * 0.18938 * 18 17 16 20 20 C 1.37740 * 119.98126 * 359.97438 * 19 18 17 21 21 H 0.97006 * 120.00421 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46881 * 59.99531 * 9 7 2 23 23 H 1.09001 * 109.46924 * 299.99614 * 9 7 2 24 24 H 1.09001 * 109.46586 * 60.00237 * 10 9 7 25 25 H 1.08993 * 109.47145 * 300.00158 * 10 9 7 26 26 H 1.08999 * 110.74837 * 211.26420 * 13 11 10 27 27 H 1.08993 * 110.74960 * 334.43559 * 13 11 10 28 28 H 1.08001 * 119.87958 * 359.04526 * 16 15 14 29 29 H 1.07996 * 119.82725 * 179.97438 * 17 16 15 30 30 H 1.07994 * 120.11568 * 180.16350 * 18 17 16 31 31 H 1.08000 * 120.01403 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 1 0.7349 -5.0041 0.7965 13 6 0.8251 -5.2488 -1.3758 14 8 1.8196 -6.0325 -2.0572 15 6 2.5511 -6.7231 -1.1400 16 6 3.3611 -7.8443 -1.3042 17 6 4.0355 -8.3780 -0.2259 18 6 3.9145 -7.8053 1.0271 19 6 3.1092 -6.6936 1.1992 20 6 2.4322 -6.1610 0.1244 21 1 -0.4851 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 2.8717 -3.6044 0.8906 25 1 2.8718 -3.6044 -0.8894 26 1 -0.1003 -5.8134 -1.2622 27 1 0.6418 -4.3114 -1.9007 28 1 3.4612 -8.2976 -2.2794 29 1 4.6614 -9.2477 -0.3607 30 1 4.4463 -8.2247 1.8682 31 1 3.0121 -6.2429 2.1758 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062719621.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = -41.132532 kcal Electronic energy + Delta-G solvation = -14056.587012 eV Core-core repulsion = 11687.905990 eV Total energy + Delta-G solvation = -2368.681022 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 218.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.14128 -38.31091 -36.40579 -34.49395 -31.91287 -30.87786 -29.69819 -26.90155 -24.51121 -23.35426 -22.59800 -21.40457 -18.60710 -17.98652 -17.60310 -17.10896 -16.56792 -16.36310 -15.14294 -14.90911 -14.59082 -14.33776 -14.10488 -13.84591 -13.39326 -13.04042 -12.83255 -12.76313 -12.57588 -12.39564 -11.90585 -11.68233 -11.55215 -11.31371 -11.14590 -10.55700 -9.79277 -9.07079 -8.21642 -6.32576 0.38818 0.45793 1.38931 1.41553 1.49665 2.36896 2.39766 2.81284 3.11405 3.48759 3.65685 3.98614 4.02058 4.25167 4.30388 4.52554 4.53912 4.62267 4.68818 4.70627 4.82689 5.00740 5.14240 5.19793 5.44003 5.48201 5.54647 5.58945 5.70574 5.74077 5.81787 6.22755 6.27443 6.82600 7.36374 8.89536 Molecular weight = 218.10amu Principal moments of inertia in cm(-1) A = 0.049126 B = 0.006149 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.824646 B = 4552.161534 C = 4775.253784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.054 0.946 9 C 0.027 3.973 10 C -0.079 4.079 11 C -0.076 4.076 12 H 0.096 0.904 13 C 0.055 3.945 14 O -0.324 6.324 15 C 0.075 3.925 16 C -0.151 4.151 17 C -0.084 4.084 18 C -0.147 4.147 19 C -0.083 4.083 20 C -0.179 4.179 21 H 0.265 0.735 22 H 0.001 0.999 23 H -0.002 1.002 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.140 0.860 29 H 0.165 0.835 30 H 0.158 0.842 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.028 -15.865 0.897 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.117 4.117 11 C -0.095 4.095 12 H 0.114 0.886 13 C -0.020 4.020 14 O -0.238 6.238 15 C 0.030 3.970 16 C -0.169 4.169 17 C -0.102 4.102 18 C -0.165 4.165 19 C -0.101 4.101 20 C -0.180 4.180 21 H 0.073 0.927 22 H 0.019 0.981 23 H 0.016 0.984 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.158 0.842 29 H 0.183 0.817 30 H 0.175 0.825 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.881 -15.740 0.650 16.815 hybrid contribution -0.129 1.364 0.009 1.370 sum 5.752 -14.376 0.658 15.498 Atomic orbital electron populations 1.70065 1.07621 1.27897 1.51400 1.25915 0.95774 1.03125 0.94598 0.85547 0.78374 0.78321 0.79105 1.19446 1.20532 1.19204 1.21640 0.93383 0.92597 1.50988 0.92750 1.19028 0.94205 0.92363 0.95372 1.21347 0.97782 0.92323 1.00237 1.21446 0.96656 0.93139 0.98214 0.88594 1.23979 0.90579 0.95553 0.91875 1.86761 1.46332 1.57979 1.32777 1.20060 0.95147 0.93530 0.88290 1.20605 1.00209 0.94404 1.01710 1.21274 0.97666 0.99998 0.91270 1.21418 0.99873 0.96393 0.98768 1.20653 0.95496 0.96143 0.97770 1.21013 1.03699 0.97987 0.95280 0.92661 0.98095 0.98405 0.92806 0.94187 0.88855 0.88184 0.84229 0.81703 0.82464 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 2 C 0.00 0.23 5.46 84.66 0.46 0.69 16 3 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.75 9.11 25.60 0.23 -31.51 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 9 C 0.03 1.44 4.86 29.85 0.15 1.58 16 10 C -0.08 -3.44 4.64 30.59 0.14 -3.29 16 11 C -0.08 -2.75 3.10 -10.65 -0.03 -2.78 16 12 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 13 C 0.05 1.88 7.42 72.57 0.54 2.42 16 14 O -0.32 -11.68 11.11 -95.09 -1.06 -12.74 16 15 C 0.07 2.43 7.03 22.68 0.16 2.59 16 16 C -0.15 -3.85 10.06 22.45 0.23 -3.62 16 17 C -0.08 -1.68 10.02 22.21 0.22 -1.46 16 18 C -0.15 -3.05 10.07 22.31 0.22 -2.83 16 19 C -0.08 -2.21 10.03 22.18 0.22 -1.99 16 20 C -0.18 -5.83 5.63 -19.52 -0.11 -5.94 16 21 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 22 H 0.00 0.04 6.90 -2.39 -0.02 0.02 16 23 H 0.00 -0.14 8.14 -2.39 -0.02 -0.15 16 24 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.04 1.80 8.12 -2.39 -0.02 1.78 16 26 H 0.09 2.72 8.14 -2.39 -0.02 2.71 16 27 H 0.10 3.72 6.70 -2.39 -0.02 3.70 16 28 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 29 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -66.39 265.24 4.79 -61.60 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 1.10 Total: 6.74 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 2.43 Total: -46.13 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.13 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -1.06 Total: -12.74 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -66.39 4.79 -61.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062719621.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.469 kcal (2) G-P(sol) polarization free energy of solvation -66.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds