Wall clock time and date at job start Mon Mar 30 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.38560 * 119.99811 * 180.02562 * 2 1 3 13 13 C 1.39761 * 119.97605 * 184.72099 * 12 2 1 14 14 N 1.31550 * 120.02617 * 179.74884 * 13 12 2 15 15 C 1.33304 * 119.99538 * 0.52901 * 14 13 12 16 16 C 1.43200 * 120.01978 * 179.70635 * 15 14 13 17 17 N 6.63505 * 120.50920 * 179.97438 * 2 1 3 18 18 C 1.39507 * 119.96145 * 359.72642 * 15 14 13 19 19 N 1.32043 * 119.97115 * 0.02562 * 18 15 14 20 20 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 21 21 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 22 22 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 23 23 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 24 24 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 25 25 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 26 26 H 1.07995 * 119.98241 * 0.02562 * 13 12 2 27 27 H 1.08005 * 120.01569 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.5540 3.6176 0.6732 8 14 3.4387 3.4163 3.4339 9 1 2.8617 2.4158 4.3673 10 1 4.9014 3.5241 3.6669 11 1 2.8015 4.7371 3.6677 12 6 2.1578 -1.2000 -0.0005 13 6 3.5518 -1.2016 0.0991 14 7 4.2102 -2.3404 0.1037 15 6 3.5484 -3.4932 0.0026 16 6 4.2650 -4.7330 0.0012 17 7 4.8335 -5.7164 0.0026 18 6 2.1573 -3.4910 -0.1022 19 7 1.4975 -2.3472 -0.1017 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 1.6083 2.0284 -0.5138 24 1 3.1498 1.1384 -0.5139 25 1 4.0308 4.4436 0.8505 26 1 4.0884 -0.2676 0.1769 27 1 1.6202 -4.4244 -0.1845 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070581101.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:25 Heat of formation + Delta-G solvation = 86.082746 kcal Electronic energy + Delta-G solvation = -13671.787272 eV Core-core repulsion = 11237.375126 eV Total energy + Delta-G solvation = -2434.412146 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69901 -36.99440 -35.97424 -33.85831 -32.78723 -30.62825 -28.30291 -26.31861 -24.32787 -23.53428 -21.59214 -19.05158 -17.40993 -16.96186 -16.62851 -14.95758 -14.77745 -14.63431 -13.96304 -13.80871 -13.57396 -12.72211 -12.70538 -12.50594 -12.34023 -11.89258 -11.47406 -11.21037 -11.03069 -10.92364 -10.83858 -10.33030 -10.12068 -9.37283 -8.84312 -8.69902 -7.19726 -6.31102 -4.42235 0.97237 1.51710 2.78514 3.15594 3.17463 3.25100 3.27021 3.38220 3.95692 4.21501 4.26665 4.59982 4.87528 5.01230 5.07269 5.47304 5.70566 5.89299 5.91080 6.19909 6.41482 6.69990 6.90860 7.21148 7.57177 7.64732 7.72560 7.83019 7.93333 8.21199 8.65902 9.26947 10.73600 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.033855 B = 0.007609 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.850872 B = 3678.883001 C = 4159.152700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.557 5.557 3 C 0.240 3.760 4 C -0.546 4.546 5 H 0.064 0.936 6 C 0.068 3.932 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.389 3.611 13 C 0.021 3.979 14 N -0.375 5.375 15 C 0.010 3.990 16 C 0.295 3.705 17 N -0.431 5.431 18 C 0.167 3.833 19 N -0.524 5.524 20 H 0.048 0.952 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.268 0.732 26 H 0.188 0.812 27 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.999 -5.999 -1.668 7.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.261 5.261 3 C 0.121 3.879 4 C -0.584 4.584 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.145 3.855 13 C -0.156 4.156 14 N -0.089 5.089 15 C -0.129 4.129 16 C -0.022 4.022 17 N -0.109 5.109 18 C 0.002 3.998 19 N -0.247 5.247 20 H 0.066 0.934 21 H 0.088 0.912 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.204 0.796 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.179 -7.087 -1.715 8.405 hybrid contribution -0.028 0.902 0.972 1.327 sum -4.207 -6.185 -0.743 7.517 Atomic orbital electron populations 1.21631 0.79422 1.02962 1.00950 1.47338 1.06337 1.03696 1.68701 1.19683 0.92429 0.77555 0.98200 1.21478 1.37811 1.07252 0.91863 0.91754 1.24942 0.94879 0.95995 0.97821 1.69916 1.37385 1.14284 1.30952 0.86396 0.78276 0.78589 0.84001 1.19611 1.20598 1.20770 1.19740 0.90437 0.87194 0.88156 1.23487 0.90905 0.96981 1.04189 1.68109 1.38911 0.97075 1.04836 1.16796 0.90786 0.87891 1.17379 1.24821 0.92699 0.91921 0.92723 1.81184 1.07375 1.11777 1.10575 1.23201 0.90134 0.96554 0.89954 1.68131 1.38296 0.97081 1.21233 0.93392 0.91185 0.90709 0.93502 0.93836 0.92266 0.79557 0.81544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 10.42 59.85 0.62 2.06 15 2 N -0.56 -10.31 2.96 -182.94 -0.54 -10.85 15 3 C 0.24 5.16 4.80 -5.19 -0.02 5.13 15 4 C -0.55 -13.15 9.35 -34.44 -0.32 -13.47 15 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 15 6 C 0.07 1.69 5.46 -17.82 -0.10 1.59 15 7 N -0.89 -23.15 13.29 55.43 0.74 -22.41 15 8 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 15 9 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 15 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 12 C 0.39 6.99 7.36 -154.91 -1.14 5.85 15 13 C 0.02 0.39 10.34 -17.10 -0.18 0.22 15 14 N -0.38 -6.69 10.41 -10.72 -0.11 -6.81 15 15 C 0.01 0.16 6.58 -84.83 -0.56 -0.39 15 16 C 0.29 4.60 15.56 -22.48 -0.35 4.25 15 17 N -0.43 -7.19 18.54 41.83 0.78 -6.42 15 18 C 0.17 2.33 10.92 -16.99 -0.19 2.15 15 19 N -0.52 -8.46 9.31 -11.93 -0.11 -8.57 15 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.07 1.02 7.46 -51.93 -0.39 0.63 15 22 H 0.07 1.14 8.07 -51.93 -0.42 0.72 15 23 H 0.05 1.05 8.07 -51.93 -0.42 0.63 15 24 H 0.04 0.97 6.38 -51.93 -0.33 0.64 15 25 H 0.27 6.65 8.31 -40.82 -0.34 6.31 15 26 H 0.19 3.56 6.22 -52.49 -0.33 3.24 15 27 H 0.17 1.66 8.06 -52.48 -0.42 1.24 15 LS Contribution 254.67 15.07 3.84 3.84 Total: -1.00 -26.44 254.67 -4.94 -31.38 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -2.27 Total: -2.21 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.23 Total: 7.38 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.75 Total: -55.06 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.44 -4.94 -31.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070581101.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.462 kcal (2) G-P(sol) polarization free energy of solvation -26.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds