Wall clock time and date at job start Mon Mar 30 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 C 1.38560 * 119.99811 * 180.02562 * 2 1 3 13 13 C 1.39761 * 119.97605 * 184.72099 * 12 2 1 14 14 N 1.31550 * 120.02617 * 179.74884 * 13 12 2 15 15 C 1.33304 * 119.99538 * 0.52901 * 14 13 12 16 16 C 1.43200 * 120.01978 * 179.70635 * 15 14 13 17 17 N 6.63505 * 120.50920 * 179.97438 * 2 1 3 18 18 C 1.39507 * 119.96145 * 359.72642 * 15 14 13 19 19 N 1.32043 * 119.97115 * 0.02562 * 18 15 14 20 20 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 21 21 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 22 22 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 23 23 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 24 24 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 25 25 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 26 26 H 1.07995 * 119.98241 * 0.02562 * 13 12 2 27 27 H 1.08005 * 120.01569 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.5540 3.6176 0.6732 8 14 3.4387 3.4163 3.4339 9 1 2.8617 2.4158 4.3673 10 1 4.9014 3.5241 3.6669 11 1 2.8015 4.7371 3.6677 12 6 2.1578 -1.2000 -0.0005 13 6 3.5518 -1.2016 0.0991 14 7 4.2102 -2.3404 0.1037 15 6 3.5484 -3.4932 0.0026 16 6 4.2650 -4.7330 0.0012 17 7 4.8335 -5.7164 0.0026 18 6 2.1573 -3.4910 -0.1022 19 7 1.4975 -2.3472 -0.1017 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5138 23 1 1.6083 2.0284 -0.5138 24 1 3.1498 1.1384 -0.5139 25 1 4.0308 4.4436 0.8505 26 1 4.0884 -0.2676 0.1769 27 1 1.6202 -4.4244 -0.1845 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070581101.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:25 Heat of formation + Delta-G solvation = 70.584580 kcal Electronic energy + Delta-G solvation = -13672.459323 eV Core-core repulsion = 11237.375126 eV Total energy + Delta-G solvation = -2435.084197 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.03156 -38.39337 -37.32559 -35.30205 -34.53077 -31.96029 -29.93603 -27.72057 -25.84237 -24.98478 -23.08103 -20.37022 -18.77869 -18.67807 -18.16083 -16.55205 -16.30120 -15.94621 -15.30433 -15.17916 -15.02382 -14.22520 -14.02580 -13.86484 -13.79035 -13.34941 -13.12357 -12.80541 -12.58549 -12.41088 -12.27111 -12.09822 -11.77277 -10.88090 -10.63335 -10.14270 -8.66532 -8.15849 -6.36951 -0.31457 0.18949 1.41624 1.46283 1.50568 1.54988 1.88306 1.97457 2.41393 2.65851 2.95016 3.09388 3.41853 3.51589 3.77909 4.18902 4.45381 4.66982 4.73216 4.92742 4.99384 5.16781 5.22562 5.62124 5.83839 5.99673 6.26970 6.36286 6.54485 6.72944 6.90883 7.35181 8.83107 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.033855 B = 0.007609 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.850872 B = 3678.883001 C = 4159.152700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.568 5.568 3 C 0.255 3.745 4 C -0.547 4.547 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.918 5.918 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.278 1.278 12 C 0.383 3.617 13 C 0.002 3.998 14 N -0.390 5.390 15 C 0.013 3.987 16 C 0.310 3.690 17 N -0.445 5.445 18 C 0.187 3.813 19 N -0.519 5.519 20 H 0.065 0.935 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.031 0.969 25 H 0.269 0.731 26 H 0.169 0.831 27 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.948 -7.404 -1.325 9.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.272 5.272 3 C 0.135 3.865 4 C -0.585 4.585 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.557 5.557 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.139 3.861 13 C -0.173 4.173 14 N -0.104 5.104 15 C -0.127 4.127 16 C -0.006 4.006 17 N -0.123 5.123 18 C 0.021 3.979 19 N -0.242 5.242 20 H 0.083 0.917 21 H 0.099 0.901 22 H 0.090 0.910 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.186 0.814 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.143 -8.491 -1.371 10.021 hybrid contribution 0.275 1.185 0.837 1.477 sum -4.868 -7.306 -0.534 8.795 Atomic orbital electron populations 1.21752 0.77530 1.03314 1.02178 1.47179 1.07361 1.02949 1.69713 1.19252 0.92033 0.78756 0.96505 1.21686 1.37036 1.06900 0.92898 0.92594 1.25606 0.94975 0.96303 1.00834 1.69996 1.38422 1.14765 1.32497 0.85538 0.77866 0.78177 0.80283 1.19529 1.20704 1.20346 1.19725 0.90242 0.87668 0.88429 1.23167 0.91232 0.96617 1.06321 1.68001 1.39816 0.97663 1.04956 1.16969 0.91671 0.87123 1.16961 1.24650 0.92254 0.91526 0.92189 1.81215 1.07683 1.12392 1.11051 1.23907 0.89491 0.97391 0.87073 1.68239 1.38097 0.96976 1.20926 0.91686 0.90128 0.91011 0.94663 0.95060 0.92223 0.81392 0.76735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.76 10.42 127.77 1.33 4.10 15 2 N -0.57 -20.72 2.96 -732.71 -2.17 -22.89 15 3 C 0.26 11.13 4.80 85.63 0.41 11.55 15 4 C -0.55 -26.59 9.35 25.60 0.24 -26.35 15 5 H 0.06 2.77 7.81 -2.91 -0.02 2.75 15 6 C 0.02 1.19 5.46 84.66 0.46 1.65 15 7 N -0.92 -48.49 13.29 21.45 0.28 -48.21 15 8 Si 0.96 40.44 29.54 68.60 2.03 42.46 15 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 11 H -0.28 -11.51 7.11 99.48 0.71 -10.80 15 12 C 0.38 13.36 7.36 133.26 0.98 14.34 15 13 C 0.00 0.08 10.34 85.10 0.88 0.96 15 14 N -0.39 -13.60 10.41 -187.84 -1.96 -15.55 15 15 C 0.01 0.37 6.58 40.47 0.27 0.64 15 16 C 0.31 8.93 15.56 88.33 1.37 10.31 15 17 N -0.44 -13.90 18.54 19.00 0.35 -13.55 15 18 C 0.19 4.55 10.92 84.97 0.93 5.48 15 19 N -0.52 -15.37 9.31 -191.65 -1.78 -17.15 15 20 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 21 H 0.08 2.17 7.46 -2.39 -0.02 2.15 15 22 H 0.07 2.11 8.07 -2.39 -0.02 2.09 15 23 H 0.04 1.61 8.07 -2.39 -0.02 1.60 15 24 H 0.03 1.44 6.38 -2.39 -0.02 1.43 15 25 H 0.27 13.50 8.31 -92.71 -0.77 12.73 15 26 H 0.17 6.71 6.22 -2.91 -0.02 6.69 15 27 H 0.22 3.12 8.06 -2.91 -0.02 3.09 15 Total: -1.00 -55.44 254.67 4.82 -50.62 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: 1.20 Total: 1.61 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 6.87 Total: 22.66 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -5.27 Total: -117.35 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.46 kcal Total: -55.44 4.82 -50.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070581101.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.203 kcal (2) G-P(sol) polarization free energy of solvation -55.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds