Wall clock time and date at job start Mon Mar 30 2020 02:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40038 * 126.15410 * 2 1 4 4 C 1.31005 * 108.86321 * 180.25434 * 3 2 1 5 5 C 1.39169 * 108.84040 * 359.76018 * 4 3 2 6 6 C 1.36817 * 126.15041 * 179.83510 * 2 1 3 7 7 C 1.46692 * 126.51953 * 0.02562 * 6 2 1 8 8 N 1.32378 * 125.43484 * 175.26790 * 7 6 2 9 9 C 1.32288 * 110.03828 * 180.26732 * 8 7 6 10 10 C 1.40085 * 107.96524 * 0.02562 * 9 8 7 11 11 C 1.39661 * 126.93837 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99471 * 340.48042 * 11 10 9 13 13 C 1.40104 * 120.00338 * 160.47789 * 11 10 9 14 14 N 1.30837 * 120.00035 * 164.87184 * 13 11 10 15 15 Si 1.86797 * 119.99822 * 344.87000 * 13 11 10 16 16 H 1.48502 * 109.46943 * 86.20130 * 15 13 11 17 17 H 1.48494 * 109.47206 * 206.19402 * 15 13 11 18 18 H 1.48493 * 109.47286 * 326.19990 * 15 13 11 19 19 N 1.36966 * 125.43429 * 355.58553 * 7 6 2 20 20 H 0.97005 * 126.63080 * 359.75287 * 19 7 6 21 21 H 1.08996 * 109.47206 * 264.30097 * 1 2 3 22 22 H 1.09004 * 109.46705 * 24.29464 * 1 2 3 23 23 H 1.08997 * 109.47370 * 144.29587 * 1 2 3 24 24 H 1.08006 * 125.58051 * 179.78453 * 4 3 2 25 25 H 1.08001 * 126.17995 * 180.02562 * 5 4 3 26 26 H 1.08001 * 126.01345 * 180.02562 * 9 8 7 27 27 H 0.96995 * 120.00116 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2912 1.1307 0.0000 4 6 3.5420 0.7413 -0.0055 5 6 3.5797 -0.6498 -0.0038 6 6 2.2721 -1.1048 0.0032 7 6 1.8352 -2.5051 0.0067 8 7 2.6327 -3.5582 -0.0793 9 6 1.9182 -4.6712 -0.0534 10 6 0.5677 -4.3153 0.0560 11 6 -0.5262 -5.1813 0.1167 12 1 -0.4283 -6.2000 -0.2287 13 6 -1.7506 -4.7289 0.6258 14 7 -2.8414 -5.4206 0.4175 15 14 -1.8256 -3.1380 1.6019 16 1 -1.9809 -1.9923 0.6700 17 1 -2.9836 -3.1811 2.5305 18 1 -0.5720 -2.9758 2.3811 19 7 0.5364 -2.9315 0.0932 20 1 -0.2528 -2.3721 0.1659 21 1 -0.3633 -0.1020 1.0225 22 1 -0.3633 0.9367 -0.4228 23 1 -0.3634 -0.8345 -0.5997 24 1 4.4031 1.3933 -0.0102 25 1 4.4683 -1.2636 -0.0068 26 1 2.3075 -5.6771 -0.1072 27 1 -3.6890 -5.1076 0.7702 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074279311.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:01 Heat of formation + Delta-G solvation = 107.122223 kcal Electronic energy + Delta-G solvation = -14239.219236 eV Core-core repulsion = 11805.719430 eV Total energy + Delta-G solvation = -2433.499806 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.45850 -41.41799 -35.84144 -34.57980 -33.20361 -32.27242 -30.36075 -27.90925 -26.63249 -23.49189 -22.47691 -21.72469 -20.64971 -19.84124 -18.51275 -17.22199 -16.66184 -16.38681 -15.70483 -15.41875 -14.94734 -14.75188 -14.21408 -14.06846 -13.87556 -13.79246 -13.29953 -13.18582 -12.91622 -12.14852 -11.71816 -11.56354 -10.86674 -10.79184 -10.60464 -9.80877 -9.10644 -8.98517 -6.52263 0.26893 0.81844 1.04430 1.15294 1.38447 1.45359 1.79634 1.87830 2.26256 2.55876 2.98569 3.41334 3.61662 3.99389 4.18675 4.20121 4.36492 4.64438 4.73243 4.80778 4.94556 5.19735 5.34551 5.70352 5.78146 5.84512 6.05958 6.23690 6.50601 6.67771 6.77147 7.39748 7.98294 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.038102 B = 0.010878 C = 0.008785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.689145 B = 2573.388493 C = 3186.613999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.393 5.393 3 N -0.321 5.321 4 C 0.060 3.940 5 C -0.261 4.261 6 C 0.166 3.834 7 C 0.107 3.893 8 N -0.431 5.431 9 C -0.161 4.161 10 C 0.186 3.814 11 C -0.453 4.453 12 H 0.094 0.906 13 C 0.053 3.947 14 N -0.820 5.820 15 Si 0.913 3.087 16 H -0.235 1.235 17 H -0.248 1.248 18 H -0.266 1.266 19 N -0.612 5.612 20 H 0.401 0.599 21 H 0.078 0.922 22 H 0.126 0.874 23 H 0.069 0.931 24 H 0.227 0.773 25 H 0.158 0.842 26 H 0.172 0.828 27 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.160 9.849 1.082 10.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.178 5.178 3 N -0.143 5.143 4 C -0.123 4.123 5 C -0.291 4.291 6 C 0.039 3.961 7 C -0.141 4.141 8 N -0.150 5.150 9 C -0.314 4.314 10 C 0.070 3.930 11 C -0.488 4.488 12 H 0.112 0.888 13 C -0.166 4.166 14 N -0.446 5.446 15 Si 0.735 3.265 16 H -0.160 1.160 17 H -0.172 1.172 18 H -0.190 1.190 19 N -0.234 5.234 20 H 0.245 0.755 21 H 0.096 0.904 22 H 0.144 0.856 23 H 0.087 0.913 24 H 0.243 0.757 25 H 0.176 0.824 26 H 0.190 0.810 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.892 10.867 1.024 11.078 hybrid contribution -1.155 -0.605 0.452 1.380 sum 0.737 10.262 1.476 10.394 Atomic orbital electron populations 1.22217 0.74232 1.05733 1.03378 1.48918 1.06633 1.02831 1.59464 1.77187 1.02652 1.07179 1.27305 1.24225 0.95498 0.94642 0.97970 1.21775 0.94969 0.95266 1.17118 1.18688 0.91972 0.83618 1.01807 1.19480 0.80531 0.91332 1.22756 1.69360 1.33943 0.97631 1.14020 1.22622 0.88413 0.96791 1.23614 1.19323 0.96498 0.80864 0.96269 1.18567 0.92362 0.99269 1.38585 0.88763 1.26635 0.94289 1.00798 0.94860 1.69610 1.00425 1.39340 1.35177 0.86370 0.80138 0.79196 0.80809 1.15950 1.17197 1.19018 1.44012 1.07918 1.07216 1.64252 0.75466 0.90376 0.85568 0.91269 0.75674 0.82424 0.81043 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.53 10.33 127.77 1.32 3.85 15 2 N -0.39 -14.21 4.07 -356.29 -1.45 -15.66 15 3 N -0.32 -10.75 12.54 -57.39 -0.72 -11.47 15 4 C 0.06 1.76 11.96 85.04 1.02 2.78 15 5 C -0.26 -9.13 10.80 22.54 0.24 -8.89 15 6 C 0.17 6.76 6.96 40.62 0.28 7.04 15 7 C 0.11 4.93 7.85 135.75 1.07 6.00 15 8 N -0.43 -20.81 11.15 -186.54 -2.08 -22.89 15 9 C -0.16 -7.79 11.94 85.07 1.02 -6.77 15 10 C 0.19 9.20 6.16 38.89 0.24 9.44 15 11 C -0.45 -23.14 9.87 23.07 0.23 -22.91 15 12 H 0.09 5.05 8.06 -2.91 -0.02 5.03 15 13 C 0.05 2.54 5.52 85.29 0.47 3.02 15 14 N -0.82 -39.79 13.93 21.86 0.30 -39.48 15 15 Si 0.91 35.50 24.85 68.60 1.71 37.21 15 16 H -0.23 -7.77 6.44 99.48 0.64 -7.13 15 17 H -0.25 -8.84 7.11 99.48 0.71 -8.13 15 18 H -0.27 -11.29 7.03 99.48 0.70 -10.59 15 19 N -0.61 -28.05 4.55 -180.28 -0.82 -28.87 15 20 H 0.40 16.61 1.96 -92.70 -0.18 16.42 15 21 H 0.08 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.13 2.90 8.14 -2.39 -0.02 2.88 15 23 H 0.07 2.14 5.93 -2.39 -0.01 2.13 15 24 H 0.23 4.20 8.06 -2.91 -0.02 4.17 15 25 H 0.16 5.20 8.06 -2.91 -0.02 5.18 15 26 H 0.17 7.52 8.06 -2.91 -0.02 7.49 15 27 H 0.30 12.96 8.30 -92.71 -0.77 12.20 15 Total: -1.00 -59.62 237.75 3.77 -55.85 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.95 Total: 31.76 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.88 Total: -6.45 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -4.76 Total: -118.37 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 1.71 Total: 37.21 kcal Total: -59.62 3.77 -55.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279311.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.969 kcal (2) G-P(sol) polarization free energy of solvation -59.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds