Wall clock time and date at job start Mon Mar 30 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36513 * 126.51877 * 2 1 4 4 C 1.35439 * 107.10210 * 179.97438 * 3 2 1 5 5 N 1.33277 * 108.47996 * 359.97438 * 4 3 2 6 6 C 1.31994 * 109.23493 * 0.02562 * 5 4 3 7 7 C 1.46658 * 125.88678 * 179.97438 * 6 5 4 8 8 N 1.32391 * 125.44091 * 180.02562 * 7 6 5 9 9 C 1.32180 * 110.04574 * 179.97438 * 8 7 6 10 10 C 1.40155 * 107.97873 * 0.02562 * 9 8 7 11 11 C 1.39635 * 126.93955 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99440 * 353.08294 * 11 10 9 13 13 C 1.40150 * 120.00386 * 173.07916 * 11 10 9 14 14 N 1.30798 * 119.99686 * 6.32270 * 13 11 10 15 15 Si 1.86797 * 119.99950 * 186.32297 * 13 11 10 16 16 H 1.48506 * 109.47279 * 94.98883 * 15 13 11 17 17 H 1.48500 * 109.46811 * 214.98694 * 15 13 11 18 18 H 1.48500 * 109.47377 * 334.98422 * 15 13 11 19 19 N 1.37031 * 125.44448 * 359.73719 * 7 6 5 20 20 H 0.97000 * 126.62715 * 0.02562 * 19 7 6 21 21 H 1.09000 * 109.47243 * 90.01948 * 1 2 3 22 22 H 1.08995 * 109.46802 * 210.02525 * 1 2 3 23 23 H 1.08998 * 109.46741 * 330.02016 * 1 2 3 24 24 H 1.07997 * 126.45023 * 359.96725 * 3 2 1 25 25 H 1.07995 * 125.76173 * 180.02562 * 4 3 2 26 26 H 1.08005 * 126.01171 * 179.97438 * 9 8 7 27 27 H 0.96997 * 119.99863 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2774 1.0971 0.0000 4 6 3.5547 0.6469 0.0006 5 7 3.5330 -0.6857 0.0015 6 6 2.2798 -1.1001 0.0010 7 6 1.8366 -2.4982 0.0011 8 7 0.5764 -2.9040 0.0001 9 6 0.5258 -4.2249 0.0000 10 6 1.8414 -4.7082 0.0017 11 6 2.2442 -6.0452 0.0017 12 1 1.5108 -6.8300 0.1129 13 6 3.6003 -6.3685 -0.1428 14 7 4.5011 -5.4203 -0.1534 15 14 4.1209 -8.1537 -0.3203 16 1 4.2520 -8.4903 -1.7607 17 1 5.4268 -8.3580 0.3566 18 1 3.0980 -9.0320 0.3023 19 7 2.6606 -3.5930 -0.0033 20 1 3.6306 -3.5873 -0.0067 21 1 -0.3634 -0.0003 -1.0276 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5135 24 1 1.9611 2.1297 -0.0005 25 1 4.4413 1.2635 0.0011 26 1 -0.3715 -4.8260 -0.0003 27 1 5.4396 -5.6441 -0.2537 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074279322.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:13 Heat of formation + Delta-G solvation = 96.964998 kcal Electronic energy + Delta-G solvation = -14005.897857 eV Core-core repulsion = 11571.957601 eV Total energy + Delta-G solvation = -2433.940256 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23555 -39.63343 -33.94750 -33.37509 -30.50326 -30.10636 -28.11785 -26.51027 -24.82505 -21.46199 -20.82604 -19.56525 -18.70092 -17.89432 -16.45746 -15.26317 -15.12794 -14.72580 -13.81002 -13.23151 -13.16872 -12.79493 -12.64564 -12.30704 -12.18865 -11.93114 -11.62002 -11.41795 -10.87028 -10.45698 -9.67859 -9.37177 -9.08469 -8.63855 -8.47089 -8.26735 -7.07025 -6.89770 -4.45881 2.33345 2.87343 2.99572 3.04701 3.31527 3.41163 3.79740 3.86454 4.67635 4.83052 5.13997 5.17971 5.25545 5.51920 5.67542 5.88567 6.07613 6.16094 6.66678 6.84850 7.02615 7.03904 7.32801 7.51533 7.71011 7.79534 8.30032 8.47281 8.61247 8.74307 9.37219 9.59432 10.00002 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.050477 B = 0.007911 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.579781 B = 3538.710692 C = 4075.160771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.450 5.450 3 C -0.088 4.088 4 C -0.025 4.025 5 N -0.505 5.505 6 C 0.330 3.670 7 C 0.113 3.887 8 N -0.454 5.454 9 C -0.158 4.158 10 C 0.217 3.783 11 C -0.435 4.435 12 H 0.100 0.900 13 C 0.065 3.935 14 N -0.828 5.828 15 Si 0.935 3.065 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.259 1.259 19 N -0.544 5.544 20 H 0.432 0.568 21 H 0.068 0.932 22 H 0.109 0.891 23 H 0.070 0.930 24 H 0.168 0.832 25 H 0.163 0.837 26 H 0.149 0.851 27 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 5.356 0.035 5.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.132 5.132 3 C -0.222 4.222 4 C -0.176 4.176 5 N -0.225 5.225 6 C 0.072 3.928 7 C -0.135 4.135 8 N -0.175 5.175 9 C -0.314 4.314 10 C 0.095 3.905 11 C -0.471 4.471 12 H 0.118 0.882 13 C -0.151 4.151 14 N -0.459 5.459 15 Si 0.759 3.241 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.183 1.183 19 N -0.161 5.161 20 H 0.280 0.720 21 H 0.087 0.913 22 H 0.127 0.873 23 H 0.089 0.911 24 H 0.185 0.815 25 H 0.181 0.819 26 H 0.167 0.833 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.489 5.593 0.023 6.122 hybrid contribution 0.762 -0.543 -0.155 0.948 sum -1.728 5.049 -0.132 5.338 Atomic orbital electron populations 1.22092 0.76315 1.04670 1.03324 1.45208 1.07577 1.05742 1.54682 1.22540 0.91500 0.92085 1.16041 1.22150 0.95890 0.91379 1.08163 1.70441 1.17800 1.11479 1.22790 1.19749 0.84396 0.85770 1.02902 1.18346 0.86422 0.84188 1.24583 1.69137 1.18016 1.14117 1.16255 1.22200 0.95128 0.89590 1.24466 1.19083 0.88959 0.87526 0.94908 1.18807 0.93121 0.90780 1.44357 0.88185 1.26080 0.96121 1.00902 0.91977 1.68948 1.03518 1.35118 1.38299 0.85843 0.78595 0.80425 0.79254 1.19354 1.20134 1.18301 1.43610 1.10684 1.03590 1.58176 0.72050 0.91309 0.87262 0.91121 0.81510 0.81931 0.83331 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.74 59.85 0.64 1.87 15 2 N -0.45 -8.68 3.19 -121.79 -0.39 -9.07 15 3 C -0.09 -1.47 11.58 -16.47 -0.19 -1.66 15 4 C -0.02 -0.46 11.84 -17.92 -0.21 -0.67 15 5 N -0.51 -11.73 11.28 -11.34 -0.13 -11.85 15 6 C 0.33 7.80 7.84 -154.32 -1.21 6.59 15 7 C 0.11 2.94 7.92 -153.85 -1.22 1.72 15 8 N -0.45 -11.35 9.09 -10.31 -0.09 -11.45 15 9 C -0.16 -3.98 11.94 -16.68 -0.20 -4.18 15 10 C 0.22 5.78 6.74 -83.67 -0.56 5.22 15 11 C -0.43 -11.02 9.34 -38.34 -0.36 -11.37 15 12 H 0.10 2.34 7.86 -52.49 -0.41 1.93 15 13 C 0.07 1.57 5.49 -17.27 -0.09 1.48 15 14 N -0.83 -20.75 10.80 55.56 0.60 -20.15 15 15 Si 0.93 18.00 29.57 -169.99 -5.03 12.97 15 16 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 17 H -0.28 -5.26 7.11 56.52 0.40 -4.85 15 18 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 19 N -0.54 -14.68 5.91 -8.34 -0.05 -14.73 15 20 H 0.43 11.86 6.47 -40.82 -0.26 11.60 15 21 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.11 1.92 6.43 -51.93 -0.33 1.58 15 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.17 2.02 8.06 -52.49 -0.42 1.60 15 25 H 0.16 2.42 8.06 -52.49 -0.42 1.99 15 26 H 0.15 3.31 8.06 -52.48 -0.42 2.89 15 27 H 0.29 6.66 8.30 -40.82 -0.34 6.32 15 LS Contribution 244.10 15.07 3.68 3.68 Total: -1.00 -29.70 244.10 -7.07 -36.77 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -2.26 Total: 14.84 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -3.40 Total: -1.02 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -0.06 Total: -67.25 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.70 -7.07 -36.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279322.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.735 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds