Wall clock time and date at job start Mon Mar 30 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36513 * 126.51877 * 2 1 4 4 C 1.35439 * 107.10210 * 179.97438 * 3 2 1 5 5 N 1.33277 * 108.47996 * 359.97438 * 4 3 2 6 6 C 1.31994 * 109.23493 * 0.02562 * 5 4 3 7 7 C 1.46658 * 125.88678 * 179.97438 * 6 5 4 8 8 N 1.32391 * 125.44091 * 180.02562 * 7 6 5 9 9 C 1.32180 * 110.04574 * 179.97438 * 8 7 6 10 10 C 1.40155 * 107.97873 * 0.02562 * 9 8 7 11 11 C 1.39635 * 126.93955 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99440 * 353.08294 * 11 10 9 13 13 C 1.40150 * 120.00386 * 173.07916 * 11 10 9 14 14 N 1.30798 * 119.99686 * 6.32270 * 13 11 10 15 15 Si 1.86797 * 119.99950 * 186.32297 * 13 11 10 16 16 H 1.48506 * 109.47279 * 94.98883 * 15 13 11 17 17 H 1.48500 * 109.46811 * 214.98694 * 15 13 11 18 18 H 1.48500 * 109.47377 * 334.98422 * 15 13 11 19 19 N 1.37031 * 125.44448 * 359.73719 * 7 6 5 20 20 H 0.97000 * 126.62715 * 0.02562 * 19 7 6 21 21 H 1.09000 * 109.47243 * 90.01948 * 1 2 3 22 22 H 1.08995 * 109.46802 * 210.02525 * 1 2 3 23 23 H 1.08998 * 109.46741 * 330.02016 * 1 2 3 24 24 H 1.07997 * 126.45023 * 359.96725 * 3 2 1 25 25 H 1.07995 * 125.76173 * 180.02562 * 4 3 2 26 26 H 1.08005 * 126.01171 * 179.97438 * 9 8 7 27 27 H 0.96997 * 119.99863 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2774 1.0971 0.0000 4 6 3.5547 0.6469 0.0006 5 7 3.5330 -0.6857 0.0015 6 6 2.2798 -1.1001 0.0010 7 6 1.8366 -2.4982 0.0011 8 7 0.5764 -2.9040 0.0001 9 6 0.5258 -4.2249 0.0000 10 6 1.8414 -4.7082 0.0017 11 6 2.2442 -6.0452 0.0017 12 1 1.5108 -6.8300 0.1129 13 6 3.6003 -6.3685 -0.1428 14 7 4.5011 -5.4203 -0.1534 15 14 4.1209 -8.1537 -0.3203 16 1 4.2520 -8.4903 -1.7607 17 1 5.4268 -8.3580 0.3566 18 1 3.0980 -9.0320 0.3023 19 7 2.6606 -3.5930 -0.0033 20 1 3.6306 -3.5873 -0.0067 21 1 -0.3634 -0.0003 -1.0276 22 1 -0.3633 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5135 24 1 1.9611 2.1297 -0.0005 25 1 4.4413 1.2635 0.0011 26 1 -0.3715 -4.8260 -0.0003 27 1 5.4396 -5.6441 -0.2537 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074279322.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:13 Heat of formation + Delta-G solvation = 78.253371 kcal Electronic energy + Delta-G solvation = -14006.709254 eV Core-core repulsion = 11571.957601 eV Total energy + Delta-G solvation = -2434.751653 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.78483 -41.51975 -35.79745 -34.86211 -32.42348 -31.85950 -29.83290 -27.89939 -26.61488 -23.22911 -22.35613 -21.35970 -20.50629 -19.72687 -18.08067 -16.95673 -16.62518 -16.43096 -15.22749 -15.03665 -14.92217 -14.45234 -14.18579 -13.81115 -13.69369 -13.57667 -13.21179 -13.02991 -12.69295 -12.00414 -11.43247 -10.95418 -10.63601 -10.52324 -10.42295 -9.93342 -8.88334 -8.68435 -6.37659 0.71680 1.31171 1.41470 1.58302 1.82634 1.87014 2.11890 2.18293 2.82755 3.05194 3.24940 3.48693 4.06851 4.17164 4.47496 4.55705 4.62740 4.84348 4.87155 5.08105 5.16429 5.47463 5.64399 5.78799 5.89365 6.25199 6.39347 6.59072 6.72273 7.16694 7.38319 7.64185 8.20276 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.050477 B = 0.007911 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.579781 B = 3538.710692 C = 4075.160771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.444 5.444 3 C -0.050 4.050 4 C -0.053 4.053 5 N -0.535 5.535 6 C 0.274 3.726 7 C 0.106 3.894 8 N -0.454 5.454 9 C -0.180 4.180 10 C 0.184 3.816 11 C -0.463 4.463 12 H 0.112 0.888 13 C 0.023 3.977 14 N -0.859 5.859 15 Si 1.013 2.987 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.249 1.249 19 N -0.558 5.558 20 H 0.424 0.576 21 H 0.078 0.922 22 H 0.084 0.916 23 H 0.118 0.882 24 H 0.225 0.775 25 H 0.196 0.804 26 H 0.169 0.831 27 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 6.526 -0.043 7.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.126 5.126 3 C -0.184 4.184 4 C -0.203 4.203 5 N -0.257 5.257 6 C 0.015 3.985 7 C -0.144 4.144 8 N -0.175 5.175 9 C -0.334 4.334 10 C 0.063 3.937 11 C -0.498 4.498 12 H 0.130 0.870 13 C -0.189 4.189 14 N -0.490 5.490 15 Si 0.833 3.167 16 H -0.189 1.189 17 H -0.195 1.195 18 H -0.172 1.172 19 N -0.175 5.175 20 H 0.271 0.729 21 H 0.097 0.903 22 H 0.103 0.897 23 H 0.136 0.864 24 H 0.242 0.758 25 H 0.213 0.787 26 H 0.187 0.813 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.771 6.748 -0.050 7.295 hybrid contribution 0.854 -0.648 -0.125 1.079 sum -1.918 6.100 -0.175 6.397 Atomic orbital electron populations 1.22307 0.74276 1.05819 1.04344 1.45521 1.08949 1.05257 1.52888 1.23474 0.90367 0.93494 1.11087 1.22850 0.98381 0.90026 1.09090 1.70329 1.18460 1.14303 1.22579 1.19562 0.85556 0.85928 1.07439 1.18992 0.86511 0.85363 1.23557 1.69162 1.17678 1.13896 1.16745 1.22582 0.95512 0.90072 1.25233 1.19598 0.89672 0.88321 0.96068 1.19199 0.94458 0.90715 1.45413 0.86995 1.27111 0.95523 1.05627 0.90665 1.69011 1.04156 1.37345 1.38465 0.84692 0.78341 0.74429 0.79284 1.18888 1.19547 1.17165 1.43735 1.10474 1.04330 1.58934 0.72941 0.90298 0.89722 0.86377 0.75818 0.78733 0.81350 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.11 10.74 127.77 1.37 3.48 15 2 N -0.44 -16.21 3.19 -539.23 -1.72 -17.94 15 3 C -0.05 -1.45 11.58 83.32 0.97 -0.49 15 4 C -0.05 -1.87 11.84 83.83 0.99 -0.87 15 5 N -0.54 -24.90 11.28 -189.79 -2.14 -27.04 15 6 C 0.27 12.99 7.84 135.87 1.06 14.06 15 7 C 0.11 5.65 7.92 135.71 1.08 6.73 15 8 N -0.45 -23.30 9.09 -186.53 -1.70 -24.99 15 9 C -0.18 -9.34 11.94 85.11 1.02 -8.32 15 10 C 0.18 10.19 6.74 38.91 0.26 10.45 15 11 C -0.46 -24.03 9.34 23.07 0.22 -23.81 15 12 H 0.11 5.31 7.86 -2.91 -0.02 5.29 15 13 C 0.02 1.14 5.49 85.31 0.47 1.61 15 14 N -0.86 -44.15 10.80 21.87 0.24 -43.91 15 15 Si 1.01 36.63 29.57 68.60 2.03 38.66 15 16 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 17 H -0.27 -9.47 7.11 99.48 0.71 -8.76 15 18 H -0.25 -8.48 7.11 99.48 0.71 -7.78 15 19 N -0.56 -31.49 5.91 -180.29 -1.07 -32.56 15 20 H 0.42 24.51 6.47 -92.71 -0.60 23.91 15 21 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.08 2.90 6.43 -2.39 -0.02 2.89 15 23 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.23 3.87 8.06 -2.91 -0.02 3.84 15 25 H 0.20 5.20 8.06 -2.91 -0.02 5.18 15 26 H 0.17 7.70 8.06 -2.91 -0.02 7.67 15 27 H 0.30 13.88 8.30 -92.71 -0.77 13.12 15 Total: -1.00 -67.56 244.10 3.68 -63.89 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: 0.60 Total: 41.06 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 7.43 Total: 2.83 kcal Atomic # 7 Polarization: -140.05 SS G_CDS: -6.39 Total: -146.44 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Total: -67.56 3.68 -63.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279322.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.140 kcal (2) G-P(sol) polarization free energy of solvation -67.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds