Wall clock time and date at job start Mon Mar 30 2020 02:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34799 * 125.87387 * 2 1 4 4 C 1.36615 * 107.58595 * 179.97438 * 3 2 1 5 5 C 1.48094 * 126.24831 * 179.97438 * 4 3 2 6 6 C 1.36338 * 126.47371 * 180.02562 * 5 4 3 7 7 C 1.41937 * 105.46638 * 179.97438 * 6 5 4 8 8 C 1.41446 * 126.44677 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99931 * 359.97438 * 8 7 6 10 10 C 1.39802 * 120.00007 * 179.97438 * 8 7 6 11 11 N 1.30914 * 119.99902 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99908 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46992 * 90.00343 * 12 10 8 14 14 H 1.48496 * 109.46759 * 210.00683 * 12 10 8 15 15 H 1.48505 * 109.47122 * 330.00076 * 12 10 8 16 16 N 1.32831 * 107.10606 * 359.97438 * 7 6 5 17 17 N 1.28448 * 110.24047 * 359.74203 * 16 7 6 18 18 H 0.97002 * 124.93436 * 180.25098 * 17 16 7 19 19 C 1.40969 * 107.50075 * 359.97438 * 4 3 2 20 20 N 1.30649 * 108.08611 * 0.02562 * 19 4 3 21 21 H 1.09001 * 109.47591 * 89.99869 * 1 2 3 22 22 H 1.09006 * 109.47394 * 210.00383 * 1 2 3 23 23 H 1.09005 * 109.47353 * 329.99736 * 1 2 3 24 24 H 1.08005 * 126.21290 * 0.23956 * 3 2 1 25 25 H 1.08005 * 127.26975 * 0.02562 * 6 5 4 26 26 H 0.97006 * 119.99464 * 179.97438 * 11 10 8 27 27 H 1.08003 * 125.96023 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2549 1.0923 0.0000 4 6 3.5521 0.6636 0.0006 5 6 4.7583 1.5228 0.0003 6 6 6.0545 1.1001 0.0003 7 6 6.8385 2.2833 -0.0007 8 6 8.2511 2.3553 -0.0015 9 1 8.8380 1.4486 -0.0009 10 6 8.8876 3.6000 -0.0030 11 7 8.1761 4.6990 -0.0032 12 14 10.7532 3.6951 -0.0033 13 1 11.2473 3.7188 -1.4035 14 1 11.1859 4.9319 0.6954 15 1 11.3094 2.5101 0.6980 16 7 5.9960 3.3102 -0.0019 17 7 4.7824 2.8894 -0.0071 18 1 3.9971 3.4588 -0.0124 19 6 3.5327 -0.7460 0.0015 20 7 2.2853 -1.1345 0.0010 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.9227 2.1200 0.0036 25 1 6.4098 0.0802 0.0003 26 1 8.6178 5.5626 -0.0038 27 1 4.3981 -1.3921 0.0018 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074279350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:57 Heat of formation + Delta-G solvation = 146.295812 kcal Electronic energy + Delta-G solvation = -13596.922964 eV Core-core repulsion = 11165.121852 eV Total energy + Delta-G solvation = -2431.801112 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.98749 -39.96595 -33.41203 -33.11677 -30.80228 -29.99738 -28.18645 -25.99717 -25.42942 -21.50852 -20.97292 -19.65188 -19.13234 -17.29584 -16.16663 -15.54485 -15.34800 -14.51541 -14.21551 -13.49894 -13.08857 -12.91242 -12.65473 -12.60754 -12.22936 -11.69444 -11.04434 -10.81304 -10.64739 -10.30362 -9.81892 -9.29625 -9.24818 -8.83348 -8.35404 -7.51755 -6.76911 -6.19469 -4.05717 1.95074 2.63788 2.70881 3.22301 3.30281 3.34473 4.14506 4.27238 4.50977 4.56408 4.57739 4.96088 5.04832 5.24361 5.29344 5.77170 5.80188 5.95512 6.06402 6.72987 6.82959 7.07758 7.34141 7.41219 7.56627 7.86748 7.91565 8.48382 8.88757 9.09667 9.37516 10.35024 10.79089 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.086483 B = 0.005955 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.684554 B = 4700.527182 C = 5009.066040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.381 5.381 3 C 0.034 3.966 4 C -0.133 4.133 5 C 0.052 3.948 6 C -0.271 4.271 7 C 0.191 3.809 8 C -0.450 4.450 9 H 0.078 0.922 10 C 0.071 3.929 11 N -0.786 5.786 12 Si 0.903 3.097 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.266 1.266 16 N -0.320 5.320 17 N -0.436 5.436 18 H 0.414 0.586 19 C 0.069 3.931 20 N -0.303 5.303 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.169 0.831 25 H 0.124 0.876 26 H 0.266 0.734 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.959 -5.357 0.070 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.164 5.164 3 C -0.112 4.112 4 C -0.146 4.146 5 C -0.076 4.076 6 C -0.303 4.303 7 C 0.042 3.958 8 C -0.489 4.489 9 H 0.096 0.904 10 C -0.146 4.146 11 N -0.415 5.415 12 Si 0.729 3.271 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.190 1.190 16 N -0.153 5.153 17 N -0.143 5.143 18 H 0.253 0.747 19 C -0.119 4.119 20 N -0.124 5.124 21 H 0.089 0.911 22 H 0.105 0.895 23 H 0.102 0.898 24 H 0.186 0.814 25 H 0.142 0.858 26 H 0.077 0.923 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.949 -4.936 0.075 13.858 hybrid contribution 0.968 0.271 -0.022 1.006 sum -11.980 -4.665 0.052 12.856 Atomic orbital electron populations 1.21768 0.74641 1.04151 1.03020 1.48150 1.06284 1.03748 1.58191 1.22354 0.90792 0.93031 1.05035 1.18337 0.90648 0.92733 1.12904 1.18834 0.92161 0.84834 1.11741 1.21480 0.91073 0.98865 1.18855 1.19200 0.93876 0.86397 0.96304 1.18518 0.88502 0.92924 1.48984 0.90392 1.25728 0.99355 0.95597 0.93890 1.69981 1.35988 0.97808 1.37743 0.86418 0.83978 0.78119 0.78605 1.20054 1.20823 1.19035 1.74679 0.86674 1.23735 1.30183 1.43659 1.07838 1.02970 1.59811 0.74714 1.23918 0.94740 0.94171 0.99046 1.77147 1.01851 1.08200 1.25245 0.91092 0.89543 0.89773 0.81392 0.85834 0.92339 0.79596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.88 11.46 59.85 0.69 1.57 15 2 N -0.38 -5.23 4.00 -67.85 -0.27 -5.50 15 3 C 0.03 0.50 11.45 -16.84 -0.19 0.31 15 4 C -0.13 -2.39 6.09 -105.41 -0.64 -3.04 15 5 C 0.05 1.13 7.11 -82.34 -0.59 0.55 15 6 C -0.27 -6.67 10.72 -38.85 -0.42 -7.08 15 7 C 0.19 5.44 6.77 -84.80 -0.57 4.87 15 8 C -0.45 -12.92 9.41 -37.78 -0.36 -13.28 15 9 H 0.08 2.10 7.84 -52.48 -0.41 1.69 15 10 C 0.07 1.98 5.49 -17.36 -0.10 1.89 15 11 N -0.79 -22.78 11.96 55.54 0.66 -22.11 15 12 Si 0.90 20.38 29.56 -169.99 -5.02 15.36 15 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 16 N -0.32 -8.96 10.47 32.29 0.34 -8.62 15 17 N -0.44 -9.98 6.90 33.33 0.23 -9.75 15 18 H 0.41 7.73 8.96 -190.45 -1.71 6.02 15 19 C 0.07 1.14 11.79 -17.02 -0.20 0.94 15 20 N -0.30 -4.88 12.53 30.83 0.39 -4.49 15 21 H 0.07 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.09 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.08 0.50 8.14 -51.93 -0.42 0.07 15 24 H 0.17 1.91 8.06 -52.48 -0.42 1.49 15 25 H 0.12 2.73 8.06 -52.48 -0.42 2.31 15 26 H 0.27 7.10 8.30 -40.82 -0.34 6.76 15 27 H 0.19 2.71 8.06 -52.48 -0.42 2.29 15 LS Contribution 250.73 15.07 3.78 3.78 Total: -1.00 -34.66 250.73 -6.06 -40.72 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.79 Total: 3.90 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -2.38 Total: -13.28 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 1.35 Total: -50.47 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.66 -6.06 -40.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.018 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds