Wall clock time and date at job start Mon Mar 30 2020 02:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34799 * 125.87387 * 2 1 4 4 C 1.36615 * 107.58595 * 179.97438 * 3 2 1 5 5 C 1.48094 * 126.24831 * 179.97438 * 4 3 2 6 6 C 1.36338 * 126.47371 * 180.02562 * 5 4 3 7 7 C 1.41937 * 105.46638 * 179.97438 * 6 5 4 8 8 C 1.41446 * 126.44677 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99931 * 359.97438 * 8 7 6 10 10 C 1.39802 * 120.00007 * 179.97438 * 8 7 6 11 11 N 1.30914 * 119.99902 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99908 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46992 * 90.00343 * 12 10 8 14 14 H 1.48496 * 109.46759 * 210.00683 * 12 10 8 15 15 H 1.48505 * 109.47122 * 330.00076 * 12 10 8 16 16 N 1.32831 * 107.10606 * 359.97438 * 7 6 5 17 17 N 1.28448 * 110.24047 * 359.74203 * 16 7 6 18 18 H 0.97002 * 124.93436 * 180.25098 * 17 16 7 19 19 C 1.40969 * 107.50075 * 359.97438 * 4 3 2 20 20 N 1.30649 * 108.08611 * 0.02562 * 19 4 3 21 21 H 1.09001 * 109.47591 * 89.99869 * 1 2 3 22 22 H 1.09006 * 109.47394 * 210.00383 * 1 2 3 23 23 H 1.09005 * 109.47353 * 329.99736 * 1 2 3 24 24 H 1.08005 * 126.21290 * 0.23956 * 3 2 1 25 25 H 1.08005 * 127.26975 * 0.02562 * 6 5 4 26 26 H 0.97006 * 119.99464 * 179.97438 * 11 10 8 27 27 H 1.08003 * 125.96023 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2549 1.0923 0.0000 4 6 3.5521 0.6636 0.0006 5 6 4.7583 1.5228 0.0003 6 6 6.0545 1.1001 0.0003 7 6 6.8385 2.2833 -0.0007 8 6 8.2511 2.3553 -0.0015 9 1 8.8380 1.4486 -0.0009 10 6 8.8876 3.6000 -0.0030 11 7 8.1761 4.6990 -0.0032 12 14 10.7532 3.6951 -0.0033 13 1 11.2473 3.7188 -1.4035 14 1 11.1859 4.9319 0.6954 15 1 11.3094 2.5101 0.6980 16 7 5.9960 3.3102 -0.0019 17 7 4.7824 2.8894 -0.0071 18 1 3.9971 3.4588 -0.0124 19 6 3.5327 -0.7460 0.0015 20 7 2.2853 -1.1345 0.0010 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.9227 2.1200 0.0036 25 1 6.4098 0.0802 0.0003 26 1 8.6178 5.5626 -0.0038 27 1 4.3981 -1.3921 0.0018 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074279350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:56 Heat of formation + Delta-G solvation = 121.416806 kcal Electronic energy + Delta-G solvation = -13598.001798 eV Core-core repulsion = 11165.121852 eV Total energy + Delta-G solvation = -2432.879946 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.086 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.41767 -41.62898 -35.30801 -34.33746 -32.29565 -31.90804 -29.59467 -27.50824 -27.13366 -23.00874 -22.35821 -21.36944 -20.78109 -18.69721 -18.21580 -16.96896 -16.38363 -16.34232 -15.38571 -15.28582 -14.79383 -14.24230 -14.12391 -13.55880 -13.52664 -13.21092 -12.84036 -12.54786 -12.44497 -11.85022 -11.68374 -11.19619 -10.47245 -10.32847 -10.31028 -9.50433 -8.44508 -8.23572 -6.17930 0.72087 1.27885 1.45250 1.46486 1.60710 1.64804 2.38784 2.40219 2.59673 2.89703 3.59496 3.69828 3.92145 4.30466 4.39863 4.47755 4.69861 4.73592 4.76075 4.85850 5.41012 5.48220 5.59719 5.62449 5.96778 6.08080 6.45678 6.66704 7.02616 7.05541 7.35247 8.39098 8.76885 Molecular weight = 218.09amu Principal moments of inertia in cm(-1) A = 0.086483 B = 0.005955 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.684554 B = 4700.527182 C = 5009.066040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.371 5.371 3 C 0.066 3.934 4 C -0.183 4.183 5 C 0.089 3.911 6 C -0.309 4.309 7 C 0.154 3.846 8 C -0.487 4.487 9 H 0.080 0.920 10 C 0.021 3.979 11 N -0.826 5.826 12 Si 0.984 3.016 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.258 1.258 16 N -0.362 5.362 17 N -0.431 5.431 18 H 0.431 0.569 19 C 0.064 3.936 20 N -0.320 5.320 21 H 0.089 0.911 22 H 0.095 0.905 23 H 0.116 0.884 24 H 0.206 0.794 25 H 0.136 0.864 26 H 0.270 0.730 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 -5.677 0.083 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.152 5.152 3 C -0.083 4.083 4 C -0.196 4.196 5 C -0.039 4.039 6 C -0.340 4.340 7 C 0.005 3.995 8 C -0.526 4.526 9 H 0.098 0.902 10 C -0.193 4.193 11 N -0.456 5.456 12 Si 0.806 3.194 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.182 1.182 16 N -0.196 5.196 17 N -0.140 5.140 18 H 0.273 0.727 19 C -0.122 4.122 20 N -0.142 5.142 21 H 0.108 0.892 22 H 0.114 0.886 23 H 0.134 0.866 24 H 0.222 0.778 25 H 0.154 0.846 26 H 0.080 0.920 27 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -14.625 -5.284 0.086 15.551 hybrid contribution 1.138 0.294 -0.030 1.175 sum -13.488 -4.991 0.056 14.381 Atomic orbital electron populations 1.22287 0.71241 1.06301 1.04931 1.48663 1.08129 1.02824 1.55634 1.22846 0.89717 0.94752 1.00954 1.18249 0.90568 0.92888 1.17881 1.19105 0.92935 0.84502 1.07381 1.21667 0.92030 0.98725 1.21555 1.19626 0.94559 0.88075 0.97254 1.18924 0.89436 0.93782 1.50462 0.90173 1.26683 1.04910 0.94760 0.92901 1.70109 1.38301 0.98413 1.38737 0.85190 0.76897 0.78430 0.78922 1.19239 1.20011 1.18162 1.74532 0.88348 1.24752 1.31928 1.43594 1.07328 1.03805 1.59299 0.72679 1.24096 0.95491 0.93932 0.98712 1.77140 1.01736 1.09383 1.25919 0.89238 0.88614 0.86566 0.77760 0.84602 0.91998 0.78828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 11.46 127.77 1.46 2.57 15 2 N -0.37 -8.82 4.00 -368.57 -1.47 -10.29 15 3 C 0.07 1.71 11.45 83.86 0.96 2.67 15 4 C -0.18 -6.26 6.09 -20.37 -0.12 -6.39 15 5 C 0.09 3.91 7.11 40.56 0.29 4.20 15 6 C -0.31 -15.64 10.72 22.74 0.24 -15.40 15 7 C 0.15 9.13 6.77 40.70 0.28 9.40 15 8 C -0.49 -28.97 9.41 23.44 0.22 -28.75 15 9 H 0.08 4.49 7.84 -2.91 -0.02 4.47 15 10 C 0.02 1.18 5.49 85.21 0.47 1.64 15 11 N -0.83 -49.13 11.96 21.80 0.26 -48.87 15 12 Si 0.98 42.58 29.56 68.60 2.03 44.61 15 13 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 14 H -0.28 -11.44 7.11 99.48 0.71 -10.73 15 15 H -0.26 -10.67 7.11 99.48 0.71 -9.97 15 16 N -0.36 -20.86 10.47 -51.75 -0.54 -21.41 15 17 N -0.43 -19.78 6.90 -48.47 -0.33 -20.11 15 18 H 0.43 15.69 8.96 -220.00 -1.97 13.72 15 19 C 0.06 2.06 11.79 85.54 1.01 3.07 15 20 N -0.32 -9.57 12.53 -56.39 -0.71 -10.28 15 21 H 0.09 0.84 8.14 -2.39 -0.02 0.82 15 22 H 0.10 1.05 8.14 -2.38 -0.02 1.03 15 23 H 0.12 0.73 8.14 -2.38 -0.02 0.71 15 24 H 0.21 3.65 8.06 -2.91 -0.02 3.62 15 25 H 0.14 6.22 8.06 -2.91 -0.02 6.20 15 26 H 0.27 14.75 8.30 -92.70 -0.77 13.98 15 27 H 0.19 5.59 8.06 -2.91 -0.02 5.57 15 Total: -1.00 -77.60 250.73 3.26 -74.33 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.77 Total: 18.99 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 4.80 Total: -26.98 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -2.80 Total: -110.96 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -77.60 3.26 -74.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074279350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.751 kcal (2) G-P(sol) polarization free energy of solvation -77.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds